Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10618.440.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.680e-33 Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 1 Query: 1 ELIGVDFGGRGLGVADLSADDCAGEEVIPTAPSDADCYSAESPIDVEGSTGAELTFCHCKWKEEGDNGENVSKY 222
EL GVDFGGR LGVADLSADDCAG+ VIPTAPSDADCYS ESPIDVEGSTGAELTFCHCKW E GENV+KY
Sbjct: 141 ELSGVDFGGRSLGVADLSADDCAGDGVIPTAPSDADCYSGESPIDVEGSTGAELTFCHCKWNE----GENVAKY 210
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 222 |
| Model size | 223 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10618.440.1 >prot_E-siliculosus-1a_F_contig10618.440.1 ID=prot_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
ELIGVDFGGRGLGVADLSADDCAGEEVIPTAPSDADCYSAESPIDVEGST
GAELTFCHCKWKEEGDNGENVSKY back to topmRNA from alignment at E-siliculosus-1a_F_contig10618:1129..2130- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10618.440.1 ID=mRNA_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10618:1129..2130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCCTCGGGGTAGCGGATCT
CTCGGCCGATGACTGCGCGGGGGAAGAAGTTATCCCGACCGCGCCCTCCG
ACGCGGATTGCTACAGGTGGGTGGGGAGCTTCGCTGTGTGTGTGTGTGCT
GGGTGAGTGAGTGTGTGTGTGTTCCCTCCTTCTCTCCGCGACAGGTAGGG
TGTGGTGGATGGGTGTGTGTGTGTGTGTGCCTTGCTTCTCTTGGACAGGT
TTGTAGGGATTCTGTGTGCGGTCAACGGGTGCGGTCGTGGGTCGAGTGTG
TGTTGCCTCGTTTAAGTTCGACGCAGGTGCGTATTGCTGCAGGGCTCCGT
TGTGCGTGGTGGGCGGATGGATGCGGAGTGTGTGTGTGCCCTCCCTCTTT
TGCTTGCTTGCTTTCGTATTCTCGCTTCTTGTGTGTTTTTTTTCGTGGTG
CTTTTCAGGTATTCTTTGTCGACTCTCTCTGTGTTGTGTTACGGTGTTTC
CGCCCTTGTTTTTTTCTCCAAAAACTTCCCGTGTTTTTTTCGCGAAAAAC
ACGAAGAAGAAAACAAGAACTACCTTCCTTCCTTCCTTCCTTCCTTCCCC
CCTTCCTTTCTTCGGGGTGTGTTGCGTCACGGTGTGATGTGGCATGCGGC
TTCTTCGTGTTTCTACTTTTTTTTTGTGAGGTGGTGTTACCATATGGACA
CGGACGTCGTCACGACTACGGCTAGTGGTAATGATCAAGGATCCCTACAT
ACACGATTTGAAATTATATCTCGGGCGCACCTTCGATTCACAAAAACGTG
CTGTACTGGTACCCATTCTGCAGTAGCAGCAGTACTTCGCCGCCGTGACA
ATGATGAATGATGATGATAATGATTTCCTCGTTTTCTTGCTTGCAGTGCG
GAGTCCCCCATAGACGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTG
CCACTGCAAATGGAAGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAAT
AC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10618:1129..2130- >mRNA_E-siliculosus-1a_F_contig10618.440.1 ID=mRNA_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10618:1129..2130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCCTCGGGGTAGCGGATCT
CTCGGCCGATGACTGCGCGGGGGAAGAAGTTATCCCGACCGCGCCCTCCG
ACGCGGATTGCTACAGGAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCC
TCGGGGTAGCGGATCTCTCGGCCGATGACTGCGCGGGGGAAGAAGTTATC
CCGACCGCGCCCTCCGACGCGGATTGCTACAGTGCGGAGTCCCCCATAGA
CGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTGCCACTGCAAATGGA
AGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAATACTGCGGAGTCCCC
CATAGACGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTGCCACTGCA
AATGGAAGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAATAC back to top
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