mRNA_E-siliculosus-1a_F_contig10618.440.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10618.440.1
Unique NamemRNA_E-siliculosus-1a_F_contig10618.440.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10618.440.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.680e-33
Identity = 63/74 (85.14%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    1 ELIGVDFGGRGLGVADLSADDCAGEEVIPTAPSDADCYSAESPIDVEGSTGAELTFCHCKWKEEGDNGENVSKY 222
            EL GVDFGGR LGVADLSADDCAG+ VIPTAPSDADCYS ESPIDVEGSTGAELTFCHCKW E    GENV+KY
Sbjct:  141 ELSGVDFGGRSLGVADLSADDCAGDGVIPTAPSDADCYSGESPIDVEGSTGAELTFCHCKWNE----GENVAKY 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10618.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBT9_9PHAE1.680e-3385.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10618contigE-siliculosus-1a_F_contig10618:1129..2130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size222
Model size223
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.938868-CDS-E-siliculosus-1a_F_contig10618:1128..12341622927562.938868-CDS-E-siliculosus-1a_F_contig10618:1128..1234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10618 1129..1234 -
1696318587.737313-CDS-E-siliculosus-1a_F_contig10618:1128..12341696318587.737313-CDS-E-siliculosus-1a_F_contig10618:1128..1234Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10618 1129..1234 -
1622927562.9541862-CDS-E-siliculosus-1a_F_contig10618:2014..21301622927562.9541862-CDS-E-siliculosus-1a_F_contig10618:2014..2130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10618 2015..2130 -
1696318587.745534-CDS-E-siliculosus-1a_F_contig10618:2014..21301696318587.745534-CDS-E-siliculosus-1a_F_contig10618:2014..2130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10618 2015..2130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10618.440.1prot_E-siliculosus-1a_F_contig10618.440.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10618 1129..2130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10618.440.1

>prot_E-siliculosus-1a_F_contig10618.440.1 ID=prot_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=74bp
ELIGVDFGGRGLGVADLSADDCAGEEVIPTAPSDADCYSAESPIDVEGST
GAELTFCHCKWKEEGDNGENVSKY
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mRNA from alignment at E-siliculosus-1a_F_contig10618:1129..2130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10618.440.1 ID=mRNA_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10618:1129..2130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCCTCGGGGTAGCGGATCT
CTCGGCCGATGACTGCGCGGGGGAAGAAGTTATCCCGACCGCGCCCTCCG
ACGCGGATTGCTACAGGTGGGTGGGGAGCTTCGCTGTGTGTGTGTGTGCT
GGGTGAGTGAGTGTGTGTGTGTTCCCTCCTTCTCTCCGCGACAGGTAGGG
TGTGGTGGATGGGTGTGTGTGTGTGTGTGCCTTGCTTCTCTTGGACAGGT
TTGTAGGGATTCTGTGTGCGGTCAACGGGTGCGGTCGTGGGTCGAGTGTG
TGTTGCCTCGTTTAAGTTCGACGCAGGTGCGTATTGCTGCAGGGCTCCGT
TGTGCGTGGTGGGCGGATGGATGCGGAGTGTGTGTGTGCCCTCCCTCTTT
TGCTTGCTTGCTTTCGTATTCTCGCTTCTTGTGTGTTTTTTTTCGTGGTG
CTTTTCAGGTATTCTTTGTCGACTCTCTCTGTGTTGTGTTACGGTGTTTC
CGCCCTTGTTTTTTTCTCCAAAAACTTCCCGTGTTTTTTTCGCGAAAAAC
ACGAAGAAGAAAACAAGAACTACCTTCCTTCCTTCCTTCCTTCCTTCCCC
CCTTCCTTTCTTCGGGGTGTGTTGCGTCACGGTGTGATGTGGCATGCGGC
TTCTTCGTGTTTCTACTTTTTTTTTGTGAGGTGGTGTTACCATATGGACA
CGGACGTCGTCACGACTACGGCTAGTGGTAATGATCAAGGATCCCTACAT
ACACGATTTGAAATTATATCTCGGGCGCACCTTCGATTCACAAAAACGTG
CTGTACTGGTACCCATTCTGCAGTAGCAGCAGTACTTCGCCGCCGTGACA
ATGATGAATGATGATGATAATGATTTCCTCGTTTTCTTGCTTGCAGTGCG
GAGTCCCCCATAGACGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTG
CCACTGCAAATGGAAGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAAT
AC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10618:1129..2130-

>mRNA_E-siliculosus-1a_F_contig10618.440.1 ID=mRNA_E-siliculosus-1a_F_contig10618.440.1|Name=mRNA_E-siliculosus-1a_F_contig10618.440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10618:1129..2130- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCCTCGGGGTAGCGGATCT
CTCGGCCGATGACTGCGCGGGGGAAGAAGTTATCCCGACCGCGCCCTCCG
ACGCGGATTGCTACAGGAGCTCATTGGCGTTGACTTCGGGGGCAGGGGCC
TCGGGGTAGCGGATCTCTCGGCCGATGACTGCGCGGGGGAAGAAGTTATC
CCGACCGCGCCCTCCGACGCGGATTGCTACAGTGCGGAGTCCCCCATAGA
CGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTGCCACTGCAAATGGA
AGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAATACTGCGGAGTCCCC
CATAGACGTGGAAGGCAGCACGGGTGCGGAGCTGACCTTCTGCCACTGCA
AATGGAAGGAAGAGGGCGACAACGGCGAGAACGTCAGCAAATAC
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