prot_E-siliculosus-1a_F_contig1061.434.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1061.434.1
Unique Nameprot_E-siliculosus-1a_F_contig1061.434.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length118
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.600e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
Query:   21 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 112
            MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.230e-21
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 0
Query:   32 STYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPV 95
            S+   GAPSN+VAGLGRGAVGFT RSDIGPART +AE GA GP GA GAS G +KDPDFGP PV
Sbjct:   11 SSRGEGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.020e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKD-------PDFGPAPVGYVAGRGRGMGDLAKSNSE 114
            M GVG  + ST++  APS YVAG+GRGAVGFTTRSDIGPAR P  +P        P AS+G           P+FG APVGYVAGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPAR-PAFDPTN------PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.820e-17
Identity = 53/89 (59.55%), Postives = 58/89 (65.17%), Query Frame = 0
Query:   26 VGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 114
            VG  + +TY    PSNYVAG+GRGA+GFTTRSDIGPAR      GA      P        DP FGPAPVGYVAGRGRGMGDLA+   E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARPAPPMGGAXXXXXXP--------DP-FGPAPVGYVAGRGRGMGDLARGQDE 80          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.420e-16
Identity = 49/94 (52.13%), Postives = 56/94 (59.57%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSEGG 116
            M G G     TY+ GAP  Y AG GRGA+GFTTRSDIGPAR+ + E                    +FG  P GYVAGRGRGMGDLA+S +EGG
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAEGG 75          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 8.090e-15
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   25 GVGKTTRSTY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAK 110
            GVG  T +T+ N   PSNYVAGLGRGAVGFTTRSDIGPART   + GAA  P  P  +       DFG A  GYVAG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA--PAQPPVA-------DFGAAXXGYVAGAGRGASILGK 80          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG 104
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL   G A   GA  A+   A  P   PAP    AGRGRG
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 5.920e-13
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPG-APGASSGAAKDPDFGPAPVGYVAGRGRGM 105
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A  G+  P G APG  +     P + P      AGRGRG+
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXA-----PPYLPG-----AGRGRGV 74          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-12
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 114
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G    P  P A  G   +    P P    AGRG G   MG   +   E
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.050e-12
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0
Query:   23 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGA 84
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G    P  P A  GA
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGA 62          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE8.600e-55100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU3_9PHAE4.230e-2175.00PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0XAM5_9STRA9.020e-1958.59Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3MCI9_9STRA2.820e-1759.55Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA3.420e-1652.13Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4D952_HETAK8.090e-1558.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YDN0_9STRA1.710e-1359.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WCC0_GLOUD5.920e-1355.95PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A2P4Y3Q2_9STRA1.120e-1249.47Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
A0A3M6VD23_9STRA2.050e-1261.29PRP1_N domain-containing protein n=7 Tax=Peronospo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010491PRP1 splicing factor, N-terminalPFAMPF06424PRP1_Ncoord: 38..69
e-value: 5.0E-12
score: 46.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1061contigE-siliculosus-1a_F_contig1061:11323..12880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1061.434.1mRNA_E-siliculosus-1a_F_contig1061.434.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1061 11323..12880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1061.434.1 ID=prot_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
RTDSPTPIHAPPPGERAAANMAMRGVGKTTRSTYNAGAPSNYVAGLGRGA
VGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAG
RGRGMGDLAKSNSEGGAG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010491PRP1_N