mRNA_E-siliculosus-1a_F_contig1061.434.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1061.434.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1061.434.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.600e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

Query:   61 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 336
            MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.230e-21
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1

Query:   94 STYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPV 285
            S+   GAPSN+VAGLGRGAVGFT RSDIGPART +AE GA GP GA GAS G +KDPDFGP PV
Sbjct:   11 SSRGEGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.020e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKD-------PDFGPAPVGYVAGRGRGMGDLAKSNSE 342
            M GVG  + ST++  APS YVAG+GRGAVGFTTRSDIGPAR P  +P        P AS+G           P+FG APVGYVAGRGRGMG+LAKS  E
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPAR-PAFDPTN------PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.820e-17
Identity = 53/89 (59.55%), Postives = 58/89 (65.17%), Query Frame = 1

Query:   76 VGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 342
            VG  + +TY    PSNYVAG+GRGA+GFTTRSDIGPAR      GA      P        DP FGPAPVGYVAGRGRGMGDLA+   E
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARPAPPMGGAXXXXXXP--------DP-FGPAPVGYVAGRGRGMGDLARGQDE 80

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.420e-16
Identity = 49/94 (52.13%), Postives = 56/94 (59.57%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSEGG 348
            M G G     TY+ GAP  Y AG GRGA+GFTTRSDIGPAR+ + E                    +FG  P GYVAGRGRGMGDLA+S +EGG
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAEGG 75

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 8.090e-15
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 1

Query:   73 GVGKTTRSTY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAK 330
            GVG  T +T+ N   PSNYVAGLGRGAVGFTTRSDIGPART   + GAA  P  P  +       DFG A  GYVAG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA--PAQPPVA-------DFGAAXXGYVAGAGRGASILGK 80

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG 312
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL   G A   GA  A+   A  P   PAP    AGRGRG
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 5.920e-13
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPG-APGASSGAAKDPDFGPAPVGYVAGRGRGM 315
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A  G+  P G APG  +     P + P      AGRGRG+
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXA-----PPYLPG-----AGRGRGV 74

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-12
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 342
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G    P  P A  G   +    P P    AGRG G   MG   +   E
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92

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BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.050e-12
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1

Query:   67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGA 252
            M G+G+  R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G    P  P A  GA
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGA 62

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5L0M8_9PHAE	8.600e-55	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KUU3_9PHAE	4.230e-21	75.00	PRP1_N domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A7S0XAM5_9STRA	9.020e-19	58.59	Hypothetical protein (Fragment) n=1 Tax=Chromulina...	[more]
A0A7S3MCI9_9STRA	2.820e-17	59.55	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A4D9D6Q2_9STRA	3.420e-16	52.13	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]
A0A7S4D952_HETAK	8.090e-15	58.62	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A5D6YDN0_9STRA	1.710e-13	59.76	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
K3WCC0_GLOUD	5.920e-13	55.95	PRP1_N domain-containing protein n=1 Tax=Globispor...	[more]
A0A2P4Y3Q2_9STRA	1.120e-12	49.47	Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt...	[more]
A0A3M6VD23_9STRA	2.050e-12	61.29	PRP1_N domain-containing protein n=7 Tax=Peronospo...	[more]

Pages

Properties


Property Name	Value
Start	0
Stop	0
Cds size	354
Model size	354
Exons	2
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko00002,ko03041
Best eggNOG OG	NA\|NA\|NA
Best tax level	Peronosporales
COG Functional cat.	A
EggNOG OGs	3Q9ZT@4776,KOG0495@1,KOG0495@2759
EggNOG free text desc.	PRP1 splicing factor, N-terminal
GOs	GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
KEGG Module	M00354
KEGG Pathway	ko03040,map03040
KEGG ko	ko:K12855
Seed eggNOG ortholog	67593.Physo108589
Seed ortholog evalue	9.3e-11
Seed ortholog score	73.2
Taxonomic scope	Eukaryota

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1061:11323..12880+
coding sequence from alignment at E-siliculosus-1a_F_contig1061:11323..12880+

protein sequence of mRNA_E-siliculosus-1a_F_contig1061.434.1

>prot_E-siliculosus-1a_F_contig1061.434.1 ID=prot_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
RTDSPTPIHAPPPGERAAANMAMRGVGKTTRSTYNAGAPSNYVAGLGRGA
VGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAG
RGRGMGDLAKSNSEGGAG

mRNA from alignment at E-siliculosus-1a_F_contig1061:11323..12880+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCACCGACTCACCGACTCCGATACACGCACCGCCGCCTGGGGAGCGCGC
CGCAGCAAACATGGCGATGCGAGGGGTGGGAAAGACAACTCGTTCGACCT
ACAATGCGGGTGAGATGATAATTCTAATTCAAACTTTTGGACAGTGAAGA
TATATTTGTGTGCTACAGCGAGGGCTGTACTGCACGCGGTCCCGGTTTTG
ACAAGGAGGGTACAGCAGTAACAGCAGTGCTATTCGTTGCACAACCCATG
CAAAAGACGTGTATCTAGAGGTGCTGCAGACGAAGGATGTCCATCCTGCT
TCCCTCCCCCCTGCTTTGAAAGCTGTGCAAATGCAGTAGAGAAAACCAAC
AAACAAGATGCACCTGTGTGCCAAGTTCAGAGGGCGGCCCAACACAAGCC
CCATGCCTGCTGCTTGCTGTACATATCATAGGTAAACATGTACCGGTACG
TGTCCCCAGGCCCCAGGCACCTTCGTATCGGTGAGGGGGCATGTGATCAG
GCCCCTTTTAAGCCCGACCAGTTGCCAAAAAGTTAAGTTAATTGCGTCCG
TCATGTGGCGACATCAACCAAATGCGGTGGGTTGGTGGGCTCTACAAGCT
CCAACACGCCAGCAACAACGCGCCTGCCGTTGCTGAATTTCTGGGCAAGT
ACTTGTATTGTAGCGCGTGTTCTCAAGTCCTGCTTGCCGCAGACACGGCA
GTAGTGCCGGACGAGGAGTACAGCAGTAGATTGATCCTGCCTCTGTCATA
GTAGATAGTGTTTGCTTACCCCTGCTATGTAATGGCAACACCAGCAGTAG
CCATAAAAAGTCGTGCTGGACTTTCTTCCCGATCCACGACGACGGCCTTT
TGATTTCCCACAAACCACTGTACCACGTACCATCACACCCCGTACAACAG
CATGACAAATCGTATAATAATAAATAGTCGTCCTTCTTCTGTTGACAACG
GTCGCAGTTCCACGCGGGGTTGTGCGCCCGTTCGTGGGAACGTCACGCAA
AGGGCAACTTCATGTTTTTGATTCAAGACGTTGGCGGAGACCAATCTATG
TCGTTTCGCCACGACACTTATCGTCGTCTCCCGACACCGCAGAAGACAAG
CAAGCAGGAGCACGAATCCTCTACTGTTTCTCTCACTTGCTTCGAAAACC
CTATGCATATTAGCAGAAATCGAAACCCTTCGTGCAGTCCTACCATCACG
ATGCATTCACTACAACACCATGCTGCAAAGAAGTTGGCAGCATATGGCAT
ATTCGTATCCTACACGCGCAGCAGCGAGTCGCCCCCCCTCCCCCCCCCCC
CAAACAACAACAGGCGCTCCTTCGAACTACGTCGCCGGTCTCGGCCGCGG
GGCCGTTGGCTTCACCACCCGGTCCGACATCGGCCCCGCCCGCACCCCTC
TCGCCGAGCCGGGGGCGGCCGGCCCGCCCGGCGCCCCCGGTGCCTCTTCC
GGCGCTGCGAAAGACCCGGATTTCGGGCCGGCGCCAGTGGGGTACGTGGC
CGGGCGTGGGCGCGGGATGGGCGACCTCGCCAAGTCGAACAGCGAGGGCG
GGGCGGGG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1061:11323..12880+

>mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCACCGACTCACCGACTCCGATACACGCACCGCCGCCTGGGGAGCGCGC
CGCAGCAAACATGGCGATGCGAGGGGTGGGAAAGACAACTCGTTCGACCT
ACAATGCGGCGCACCGACTCACCGACTCCGATACACGCACCGCCGCCTGG
GGAGCGCGCCGCAGCAAACATGGCGATGCGAGGGGTGGGAAAGACAACTC
GTTCGACCTACAATGCGGGCGCTCCTTCGAACTACGTCGCCGGTCTCGGC
CGCGGGGCCGTTGGCTTCACCACCCGGTCCGACATCGGCCCCGCCCGCAC
CCCTCTCGCCGAGCCGGGGGCGGCCGGCCCGCCCGGCGCCCCCGGTGCCT
CTTCCGGCGCTGCGAAAGACCCGGATTTCGGGCCGGCGCCAGTGGGGTAC
GTGGCCGGGCGTGGGCGCGGGATGGGCGACCTCGCCAAGTCGAACAGCGA
GGGCGGGGCGGGGGCGCTCCTTCGAACTACGTCGCCGGTCTCGGCCGCGG
GGCCGTTGGCTTCACCACCCGGTCCGACATCGGCCCCGCCCGCACCCCTC
TCGCCGAGCCGGGGGCGGCCGGCCCGCCCGGCGCCCCCGGTGCCTCTTCC
GGCGCTGCGAAAGACCCGGATTTCGGGCCGGCGCCAGTGGGGTACGTGGC
CGGGCGTGGGCGCGGGATGGGCGACCTCGCCAAGTCGAACAGCGAGGGCG
GGGCGGGG