mRNA_E-siliculosus-1a_F_contig1061.434.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE) HSP 1 Score: 177 bits (448), Expect = 8.600e-55 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 Query: 61 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 336
MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct: 1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 4.230e-21 Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1 Query: 94 STYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPV 285
S+ GAPSN+VAGLGRGAVGFT RSDIGPART +AE GA GP GA GAS G +KDPDFGP PV
Sbjct: 11 SSRGEGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.020e-19 Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKD-------PDFGPAPVGYVAGRGRGMGDLAKSNSE 342
M GVG + ST++ APS YVAG+GRGAVGFTTRSDIGPAR P +P P AS+G P+FG APVGYVAGRGRGMG+LAKS E
Sbjct: 1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPAR-PAFDPTN------PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.820e-17 Identity = 53/89 (59.55%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 76 VGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 342
VG + +TY PSNYVAG+GRGA+GFTTRSDIGPAR GA P DP FGPAPVGYVAGRGRGMGDLA+ E
Sbjct: 1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARPAPPMGGAXXXXXXP--------DP-FGPAPVGYVAGRGRGMGDLARGQDE 80
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.420e-16 Identity = 49/94 (52.13%), Postives = 56/94 (59.57%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSEGG 348
M G G TY+ GAP Y AG GRGA+GFTTRSDIGPAR+ + E +FG P GYVAGRGRGMGDLA+S +EGG
Sbjct: 1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAEGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 8.090e-15 Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 73 GVGKTTRSTY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAK 330
GVG T +T+ N PSNYVAGLGRGAVGFTTRSDIGPART + GAA P P + DFG A GYVAG GRG L K
Sbjct: 3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA--PAQPPVA-------DFGAAXXGYVAGAGRGASILGK 80
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13 Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG 312
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL G A GA A+ A P PAP AGRGRG
Sbjct: 1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD) HSP 1 Score: 73.9 bits (180), Expect = 5.920e-13 Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPG-APGASSGAAKDPDFGPAPVGYVAGRGRGM 315
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A G+ P G APG + P + P AGRGRG+
Sbjct: 1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXA-----PPYLPG-----AGRGRGV 74
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.120e-12 Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 342
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G P P A G + P P AGRG G MG + E
Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match: A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 2.050e-12 Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGA 252
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G P P A GA
Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGA 62 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1061.434.1 >prot_E-siliculosus-1a_F_contig1061.434.1 ID=prot_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp RTDSPTPIHAPPPGERAAANMAMRGVGKTTRSTYNAGAPSNYVAGLGRGAback to top mRNA from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ >mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |