Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)
HSP 1 Score: 177 bits (448), Expect = 8.600e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query: 61 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 336
MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct: 1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)
HSP 1 Score: 89.4 bits (220), Expect = 4.230e-21
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 94 STYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPV 285
S+ GAPSN+VAGLGRGAVGFT RSDIGPART +AE GA GP GA GAS G +KDPDFGP PV
Sbjct: 11 SSRGEGAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)
HSP 1 Score: 89.7 bits (221), Expect = 9.020e-19
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKD-------PDFGPAPVGYVAGRGRGMGDLAKSNSE 342
M GVG + ST++ APS YVAG+GRGAVGFTTRSDIGPAR P +P P AS+G P+FG APVGYVAGRGRGMG+LAKS E
Sbjct: 1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPAR-PAFDPTN------PAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKSQGE 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)
HSP 1 Score: 86.3 bits (212), Expect = 2.820e-17
Identity = 53/89 (59.55%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 76 VGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSE 342
VG + +TY PSNYVAG+GRGA+GFTTRSDIGPAR GA P DP FGPAPVGYVAGRGRGMGDLA+ E
Sbjct: 1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARPAPPMGGAXXXXXXP--------DP-FGPAPVGYVAGRGRGMGDLARGQDE 80
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)
HSP 1 Score: 83.2 bits (204), Expect = 3.420e-16
Identity = 49/94 (52.13%), Postives = 56/94 (59.57%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNSEGG 348
M G G TY+ GAP Y AG GRGA+GFTTRSDIGPAR+ + E +FG P GYVAGRGRGMGDLA+S +EGG
Sbjct: 1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQAEGG 75
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)
HSP 1 Score: 76.6 bits (187), Expect = 8.090e-15
Identity = 51/87 (58.62%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 73 GVGKTTRSTY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAK 330
GVG T +T+ N PSNYVAGLGRGAVGFTTRSDIGPART + GAA P P + DFG A GYVAG GRG L K
Sbjct: 3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA--PAQPPVA-------DFGAAXXGYVAGAGRGASILGK 80
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)
HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG 312
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+PL G A GA A+ A P PAP AGRGRG
Sbjct: 1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)
HSP 1 Score: 73.9 bits (180), Expect = 5.920e-13
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPG-APGASSGAAKDPDFGPAPVGYVAGRGRGM 315
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A G+ P G APG + P + P AGRGRG+
Sbjct: 1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGAPGXXA-----PPYLPG-----AGRGRGV 74
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)
HSP 1 Score: 72.8 bits (177), Expect = 1.120e-12
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRG---MGDLAKSNSE 342
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G P P A G + P P AGRG G MG + E
Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGRGVEIPGRPGPS---AGRGSGTAGMGGFGREKDE 92
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Match:
A0A3M6VD23_9STRA (PRP1_N domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VD23_9STRA)
HSP 1 Score: 72.4 bits (176), Expect = 2.050e-12
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 67 MRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGA 252
M G+G+ R+TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G P P A GA
Sbjct: 1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDGTQDAPFLPPAGRGA 62
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1061.434.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 8.60e-55 / Id = 100.00 Expect = 4.23e-21 / Id = 75.00 Expect = 9.02e-19 / Id = 58.59 Expect = 2.82e-17 / Id = 59.55 Expect = 3.42e-16 / Id = 52.13 Expect = 8.09e-15 / Id = 58.62 Expect = 1.71e-13 / Id = 59.76 Expect = 5.92e-13 / Id = 55.95 Expect = 1.12e-12 / Id = 49.47 Expect = 2.05e-12 / Id = 61.29 Sequence A0A6H5L0M8_9PHAE A0A6H5KUU3_9PHAE A0A7S0XAM5_9STRA A0A7S3MCI9_9STRA A0A4D9D6Q2_9STRA A0A7S4D952_HETAK A0A5D6YDN0_9STRA K3WCC0_GLOUD A0A2P4Y3Q2_9STRA A0A3M6VD23_9STRA Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 0 Cds size 354 Model size 354 Exons 2 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko00002,ko03041 Best eggNOG OG NA|NA|NA Best tax level Peronosporales COG Functional cat. A EggNOG OGs 3Q9ZT@4776,KOG0495@1,KOG0495@2759 EggNOG free text desc. PRP1 splicing factor, N-terminal GOs GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141 KEGG Module M00354 KEGG Pathway ko03040,map03040 KEGG ko ko:K12855 Seed eggNOG ortholog 67593.Physo108589 Seed ortholog evalue 9.3e-11 Seed ortholog score 73.2 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927562.3578677-CDS-E-siliculosus-1a_F_contig1061:11322..11431 1622927562.3578677-CDS-E-siliculosus-1a_F_contig1061:11322..11431 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig1061 11323..11431 + 1696318587.3219986-CDS-E-siliculosus-1a_F_contig1061:11322..11431 1696318587.3219986-CDS-E-siliculosus-1a_F_contig1061:11322..11431 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig1061 11323..11431 + 1622927562.373995-CDS-E-siliculosus-1a_F_contig1061:12635..12880 1622927562.373995-CDS-E-siliculosus-1a_F_contig1061:12635..12880 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig1061 12636..12880 + 1696318587.3426933-CDS-E-siliculosus-1a_F_contig1061:12635..12880 1696318587.3426933-CDS-E-siliculosus-1a_F_contig1061:12635..12880 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig1061 12636..12880 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1061.434.1
>prot_E-siliculosus-1a_F_contig1061.434.1 ID=prot_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
RTDSPTPIHAPPPGERAAANMAMRGVGKTTRSTYNAGAPSNYVAGLGRGA back to top mRNA from alignment at E-siliculosus-1a_F_contig1061:11323..12880+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CGCACCGACTCACCGACTCCGATACACGCACCGCCGCCTGGGGAGCGCGC
CGCAGCAAACATGGCGATGCGAGGGGTGGGAAAGACAACTCGTTCGACCT
ACAATGCGG GTGAGATGATAATTCTAATTCAAACTTTTGGACAGTGAAGA
TATATTTGTGTGCTACAGCGAGGGCTGTACTGCACGCGGTCCCGGTTTTG
ACAAGGAGGGTACAGCAGTAACAGCAGTGCTATTCGTTGCACAACCCATG
CAAAAGACGTGTATCTAGAGGTGCTGCAGACGAAGGATGTCCATCCTGCT
TCCCTCCCCCCTGCTTTGAAAGCTGTGCAAATGCAGTAGAGAAAACCAAC
AAACAAGATGCACCTGTGTGCCAAGTTCAGAGGGCGGCCCAACACAAGCC
CCATGCCTGCTGCTTGCTGTACATATCATAGGTAAACATGTACCGGTACG
TGTCCCCAGGCCCCAGGCACCTTCGTATCGGTGAGGGGGCATGTGATCAG
GCCCCTTTTAAGCCCGACCAGTTGCCAAAAAGTTAAGTTAATTGCGTCCG
TCATGTGGCGACATCAACCAAATGCGGTGGGTTGGTGGGCTCTACAAGCT
CCAACACGCCAGCAACAACGCGCCTGCCGTTGCTGAATTTCTGGGCAAGT
ACTTGTATTGTAGCGCGTGTTCTCAAGTCCTGCTTGCCGCAGACACGGCA
GTAGTGCCGGACGAGGAGTACAGCAGTAGATTGATCCTGCCTCTGTCATA
GTAGATAGTGTTTGCTTACCCCTGCTATGTAATGGCAACACCAGCAGTAG
CCATAAAAAGTCGTGCTGGACTTTCTTCCCGATCCACGACGACGGCCTTT
TGATTTCCCACAAACCACTGTACCACGTACCATCACACCCCGTACAACAG
CATGACAAATCGTATAATAATAAATAGTCGTCCTTCTTCTGTTGACAACG
GTCGCAGTTCCACGCGGGGTTGTGCGCCCGTTCGTGGGAACGTCACGCAA
AGGGCAACTTCATGTTTTTGATTCAAGACGTTGGCGGAGACCAATCTATG
TCGTTTCGCCACGACACTTATCGTCGTCTCCCGACACCGCAGAAGACAAG
CAAGCAGGAGCACGAATCCTCTACTGTTTCTCTCACTTGCTTCGAAAACC
CTATGCATATTAGCAGAAATCGAAACCCTTCGTGCAGTCCTACCATCACG
ATGCATTCACTACAACACCATGCTGCAAAGAAGTTGGCAGCATATGGCAT
ATTCGTATCCTACACGCGCAGCAGCGAGTCGCCCCCCCTCCCCCCCCCCC
CAAACAACAACAGGCGCTCCTTCGAACTACGTCGCCGGTCTCGGCCGCGG
GGCCGTTGGCTTCACCACCCGGTCCGACATCGGCCCCGCCCGCACCCCTC
TCGCCGAGCCGGGGGCGGCCGGCCCGCCCGGCGCCCCCGGTGCCTCTTCC
GGCGCTGCGAAAGACCCGGATTTCGGGCCGGCGCCAGTGGGGTACGTGGC
CGGGCGTGGGCGCGGGATGGGCGACCTCGCCAAGTCGAACAGCGAGGGCG
GGGCGGGG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1061:11323..12880+
>mRNA_E-siliculosus-1a_F_contig1061.434.1 ID=mRNA_E-siliculosus-1a_F_contig1061.434.1|Name=mRNA_E-siliculosus-1a_F_contig1061.434.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1061:11323..12880+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top