prot_E-siliculosus-1a_F_contig106.427.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig106.427.1
Unique Nameprot_E-siliculosus-1a_F_contig106.427.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length516
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 554 bits (1427), Expect = 2.020e-191
Identity = 421/500 (84.20%), Postives = 427/500 (85.40%), Query Frame = 0
Query:    1 MADEDALFAEFMGEIKSTVVAAETKTAADAGE-DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPSPDSSG-KGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGGPXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 498
            MADEDALFAEFMGEIKSTVVAAETK AADAGE DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTA                                  XXXXXXXXXXXXX           GK           XX   +GVK+GSG    XXXXXXXXXXXXXXXXXXX    DEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGA +GMAGFGXXXXXXXXXXXXXXXXX+PPGXXXXXXXXXXXXXXXX GGPGPYPDGSMGYGYGGPMNGMMPGG XXXXXXXXXXXXXXXXXXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAK+IREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKE+
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 521 bits (1343), Expect = 1.410e-178
Identity = 412/551 (74.77%), Postives = 421/551 (76.41%), Query Frame = 0
Query:    1 MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TRPSPDSSGKGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGG----------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGHL 515
            M+DEDA+FAEFMGEIKSTVVAAETKTA+DAGEDDGAASDAASVGDV+AD  EGGGE RNHADTTKRR ETEASPSPAPKKPRFMGKLVAAA PVKAGAVAAASTA                              XXXXXXXXXXXXXXXXX  T P PD+SGKG XXXXXXXXXXXXXXXX         A G                       DEEMVGFGGSGGVAK +AGMDMHNNPS MGGGGPGTMPGNNNGMHMGAPPPG+RGNMG+MGA NGMAGFG    XXXXXXXXXXX  +PPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMN MM GG                                   XXXXXXX         XXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG L
Sbjct:    1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRR-ETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTARATGSGPKASTGDKGTAAAKKDPDGSGASAXXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXXXXXXXXXXXXXXXXXSERTPADGGDANGAGSKD-------------DEEMVGFGGSGGVAKHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPPPGIRGNMGVMGAGNGMAGFGGDGYXXXXXXXXXXXG-MPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNVMMSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.910e-49
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 0
Query:  389 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGHL 515
            KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  Y SF KAKV+REK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK       KKALG L
Sbjct:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 163 bits (413), Expect = 9.820e-43
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 0
Query:  383 KAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 513
            K+ +  K  R A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KY SFAKAKV+R+K+  KSKGYGF SF+D  D  KALRE  GKY+GNRP+K+ KS W+ERD+KEVKK  XXXXX K ALG
Sbjct:  167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALG 297          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)

HSP 1 Score: 161 bits (408), Expect = 3.460e-42
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 0
Query:  379 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 501
            VA A++ S  KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF  Y SFA AKV+R+K   KSKGYGFVSFLD  D  KA+RE  GKY+GNRP+KISK  W++R +  VKKK
Sbjct:  150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVVKKK 272          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.110e-42
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 0
Query:  392 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 513
            R AGGK+WED+TL EWPEND+RLFVGDLG + T   L   FRKY SFAKA++ R++   K + YGFVSFLDGMDM+KALREQ GKY GNRPMK+SKSTWKERD  E++KK        K LG
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLG 217          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.680e-41
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 0
Query:  385 ESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 513
            ++  K+ R AGG++WED TLAEW END+RLFVGDLG +VT   L   FR+Y SFAKAK+ R++   K + +GFVSFLDGMD +KA+REQQGKY G RPMKI +STWK+RDV+E+KKK       +K LG
Sbjct:   36 KAPKKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLG 164          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.520e-41
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 0
Query:  386 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 501
            S  KF R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +Y+SFA A+VIR+K   KSKGYGFVSF+DG+D +KA+RE  GKY+G+RP+KI+K  W+ER ++ VKKK
Sbjct:  158 SDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKK 273          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 155 bits (391), Expect = 5.490e-41
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 0
Query:  380 AKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALG 513
            A  + ++S +  R AGGK+W D++L  WPEND+RLFVG+LGNEVTD+ ++ AF  Y S AKAKVIREK++ KSKGYGFVSFLD  D  KALRE  GKY+GNRP K+ +S WK+R +KEV+KK       KK+ G
Sbjct:   47 APERPKASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWG 180          
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A1V9YAQ1_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.320e-41
Identity = 82/134 (61.19%), Postives = 93/134 (69.40%), Query Frame = 0
Query:  379 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKAL 512
            VA A   S  KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L  AF  Y+SFA AKV+R+K   KS+GYGFVSFLD  D  KA+R+  GKY+GNRP+KISK  W +R +  VKKK       KK L
Sbjct:  144 VANAAVNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLTQAFSTYSSFAMAKVVRDKLTHKSRGYGFVSFLDPFDAAKAMRDMNGKYIGNRPVKISKGKWADRALDVVKKKVKAGKKSKKHL 277          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJT5_ECTSI2.020e-19184.20Temporarily Assigned Gene name family member (Tag-... [more]
A0A6H5KAJ6_9PHAE1.410e-17874.77RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CHC6_9STRA2.910e-4971.65RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RJZ2_9STRA9.820e-4365.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
T0QBK6_SAPDV3.460e-4265.85RRM domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A7S1XX46_9STRA4.110e-4264.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U4X3_9STRA1.680e-4159.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6G0XJI1_9STRA4.520e-4165.52RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S3JN71_9STRA5.490e-4158.21Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1V9YAQ1_9STRA8.320e-4161.19RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 413..486
e-value: 1.3E-14
score: 64.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 414..484
e-value: 5.9E-14
score: 51.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 412..490
score: 14.863
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 411..487
e-value: 1.0E-18
score: 69.1
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 369..506
NoneNo IPR availablePANTHERPTHR13952:SF8RRM-CONTAINING PROTEIN-RELATEDcoord: 369..506
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 399..492

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig106contigE-siliculosus-1a_F_contig106:47268..53748 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig106.427.1mRNA_E-siliculosus-1a_F_contig106.427.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig106 46591..53952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig106.427.1 ID=prot_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=516bp
MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADD
AEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVA
AASTARAAGSGPKASTGDKGTAAAKDPDGSGADAGTGGGANGGNKTTNGK
KTTRPSPDSSGKGKGGKGETTKTGGGGKGKEGVKDGSGAARGGAGGASER
TPADGGDENGAGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPG
TMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGGGGGYGMPPPGMGMN
MGVPPGMNMGMPPGMNMGMPPGMGGPGPYPDGSMGYGYGGPMNGMMPGGP
GPGMGGSAAGSGAEGGAAAAAAAGGKDKVAKAKAESSNKFKRVAGGKSWE
DETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNK
KSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKK
KTKRAKKVKKALGHL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom