Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)
HSP 1 Score: 556 bits (1434), Expect = 4.060e-188
Identity = 421/500 (84.20%), Postives = 427/500 (85.40%), Query Frame = 1
Query: 205 MADEDALFAEFMGEIKSTVVAAETKTAADAGE-DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPSPDSSG-KGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGGPXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 1698
MADEDALFAEFMGEIKSTVVAAETK AADAGE DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTA XXXXXXXXXXXXX GK XX +GVK+GSG XXXXXXXXXXXXXXXXXXX DEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGA +GMAGFGXXXXXXXXXXXXXXXXX+PPGXXXXXXXXXXXXXXXX GGPGPYPDGSMGYGYGGPMNGMMPGG XXXXXXXXXXXXXXXXXXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAK+IREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKE+
Sbjct: 1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)
HSP 1 Score: 522 bits (1345), Expect = 1.330e-174
Identity = 411/551 (74.59%), Postives = 420/551 (76.23%), Query Frame = 1
Query: 205 MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TRPSPDSSGKGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGG----------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALGHL 1749
M+DEDA+FAEFMGEIKSTVVAAETKTA+DAGEDDGAASDAASVGDV+AD EGGGE RNHADTTKRR ETEASPSPAPKKPRFMGKLVAAA PVKAGAVAAASTA XXXXXXXXXXXXXXXXX T P PD+SGKG XXXXXXXXXXXXXXXX A G DEEMVGFGGSGGVAK +AGMDMHNNPS MGGGGPGTMPGNNNGMHMGAPPPG+RGNMG+MGA NGMAGFG XXXXXXXXXXX +PPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMN MM GG XXXXXXX XXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXX KKALG L
Sbjct: 1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRR-ETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTARATGSGPKASTGDKGTAAAKKDPDGSGASAXXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXXXXXXXXXXXXXXXXXSERTPADGGDANGAGSKD-------------DEEMVGFGGSGGVAKHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPPPGIRGNMGVMGAGNGMAGFGGDGYXXXXXXXXXXXG-MPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNVMMSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)
HSP 1 Score: 184 bits (466), Expect = 6.490e-48
Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 1
Query: 1369 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALGHL 1749
KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF Y SF KAKV+REK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK KKALG L
Sbjct: 235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)
HSP 1 Score: 165 bits (417), Expect = 6.760e-42
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 1
Query: 1351 KAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
K+ + K R A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KY SFAKAKV+R+K+ KSKGYGF SF+D D KALRE GKY+GNRP+K+ KS W+ERD+KEVKK XXXXX K ALG
Sbjct: 167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALG 297
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV)
HSP 1 Score: 162 bits (410), Expect = 4.070e-41
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1
Query: 1339 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 1707
VA A++ S KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF Y SFA AKV+R+K KSKGYGFVSFLD D KA+RE GKY+GNRP+KISK W++R + VKKK
Sbjct: 150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVVKKK 272
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)
HSP 1 Score: 160 bits (404), Expect = 4.280e-41
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 1
Query: 1378 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
R AGGK+WED+TL EWPEND+RLFVGDLG + T L FRKY SFAKA++ R++ K + YGFVSFLDGMDM+KALREQ GKY GNRPMK+SKSTWKERD E++KK K LG
Sbjct: 96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLG 217
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)
HSP 1 Score: 156 bits (395), Expect = 1.470e-40
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 1357 ESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
++ K+ R AGG++WED TLAEW END+RLFVGDLG +VT L FR+Y SFAKAK+ R++ K + +GFVSFLDGMD +KA+REQQGKY G RPMKI +STWK+RDV+E+KKK +K LG
Sbjct: 36 KAPKKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLG 164
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)
HSP 1 Score: 159 bits (402), Expect = 4.600e-40
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 1
Query: 1360 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 1707
S KF R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +Y+SFA A+VIR+K KSKGYGFVSF+DG+D +KA+RE GKY+G+RP+KI+K W+ER ++ VKKK
Sbjct: 158 SDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKK 273
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A1V9YAQ1_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ1_9STRA)
HSP 1 Score: 159 bits (401), Expect = 5.960e-40
Identity = 82/134 (61.19%), Postives = 93/134 (69.40%), Query Frame = 1
Query: 1339 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKAL 1740
VA A S KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L AF Y+SFA AKV+R+K KS+GYGFVSFLD D KA+R+ GKY+GNRP+KISK W +R + VKKK KK L
Sbjct: 144 VANAAVNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLTQAFSTYSSFAMAKVVRDKLTHKSRGYGFVSFLDPFDAAKAMRDMNGKYIGNRPVKISKGKWADRALDVVKKKVKAGKKSKKHL 277
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match:
A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)
HSP 1 Score: 155 bits (392), Expect = 6.350e-40
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 1
Query: 1342 AKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
A + ++S + R AGGK+W D++L WPEND+RLFVG+LGNEVTD+ ++ AF Y S AKAKVIREK++ KSKGYGFVSFLD D KALRE GKY+GNRP K+ +S WK+R +KEV+KK KK+ G
Sbjct: 47 APERPKASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWG 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 4.06e-188 / Id = 84.20 Expect = 1.33e-174 / Id = 74.59 Expect = 6.49e-48 / Id = 71.65 Expect = 6.76e-42 / Id = 65.65 Expect = 4.07e-41 / Id = 65.85 Expect = 4.28e-41 / Id = 64.75 Expect = 1.47e-40 / Id = 59.69 Expect = 4.60e-40 / Id = 65.52 Expect = 5.96e-40 / Id = 61.19 Expect = 6.35e-40 / Id = 58.21 Sequence D8LJT5_ECTSI A0A6H5KAJ6_9PHAE A0A836CHC6_9STRA A0A7S2RJZ2_9STRA T0QBK6_SAPDV A0A7S1XX46_9STRA A0A7R9U4X3_9STRA A0A6G0XJI1_9STRA A0A1V9YAQ1_9STRA A0A7S3JN71_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1
Stop 1
Cds size 1548
Model size 2429
Exons 7
Hectar predicted targeting category other localisation
Seed eggNOG ortholog 2880.D8LJT5
Best eggNOG OG NA|NA|NA
Best tax level Eukaryota
COG Functional cat. S
EggNOG OGs KOG0226@1,KOG0226@2759
EggNOG free text desc. RNA binding
GOs GO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0002088,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006978,GO:0007049,GO:0007050,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007423,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031570,GO:0031571,GO:0032501,GO:0032502,GO:0033119,GO:0033554,GO:0034641,GO:0035556,GO:0042127,GO:0042770,GO:0042772,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048255,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070935,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902369,GO:1902373,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903312,GO:2000045,GO:2000134
Preferred name RBM42
Seed ortholog evalue 2.9e-157
Seed ortholog score 562.0
Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.427.1
>prot_E-siliculosus-1a_F_contig106.427.1 ID=prot_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=516bp
MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADD AEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVA AASTARAAGSGPKASTGDKGTAAAKDPDGSGADAGTGGGANGGNKTTNGK KTTRPSPDSSGKGKGGKGETTKTGGGGKGKEGVKDGSGAARGGAGGASER TPADGGDENGAGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPG TMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGGGGGYGMPPPGMGMN MGVPPGMNMGMPPGMNMGMPPGMGGPGPYPDGSMGYGYGGPMNGMMPGGP GPGMGGSAAGSGAEGGAAAAAAAGGKDKVAKAKAESSNKFKRVAGGKSWE DETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNK KSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKK KTKRAKKVKKALGHL* back to top mRNA from alignment at E-siliculosus-1a_F_contig106:46591..53952-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig106.427.1 ID=mRNA_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:46591..53952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GGTGCGTCTCTCCGCTGCGCTGCTCGCTAGCCATTGCTTTTAGTCTCTTT
TTCGGGCATCGTGCGTTGCCCCTGGCGGTTTGTGTGCACTTTGTGTGGTT
ATCCTTGATTGCTGTCGGTTGTTCGTCTTCAAGTCGACGGCTCTGGCGAC
AGGGGAGAGGCAAAGCGAAGCACCCACCCTTACTTGATTTGATAATCAAC
CAAG ATGGCGGACGAGGATGCTCTTTTCGCCGAGTTCATGGGTGAGATCA
AGAGCACGGTCGTGGCAGCGGAGACAAAAACAGCAGCTGATGCTGGGGAA
GATGATGGTGCTGCTTCTGATGCGGCTTCGGTGGGGGACGTCAAAGCCGA
CGACGCCGAGGGAGGAGGAGAAGGGAGGAACCACGCCGATACCACCAAGC
GAAGAGGAGAGACCGAG GTACATGCATATGATGACTGCTTGCACCGCCAG
ATACAGCACTAAATAGCAGCATCAGAGCAGCGGGTGATAGCAGATGTTTA
GGAATAATTGTAGTGCTCCGTCGCAGCACATGGACGACCTACGTAGCCAT
TTGCATCCAGATTCTGCACCGACAGCGCAGTGTGATTTGTGTATATGTAA
TCTGCCTGGTGTCCCCGTGATGCCATGGTGCTTCCCCGTGAACATTCTTC
AGGTAAACCAGTACTGCTGTATAGCCAAACAAACCTCGGGACGTATACCC
GGGAATCCAAGGTGTGCGCAGTACACACACCACACCCGGCACCCGGCGGT
GCTCACTACGTGTTTCATGCGTTTATTTTTCGGCTCTGTGTACAATATCA
ACTCTTGCCGGTGGGAAGAGTAATTAATCCTCCGCCTATCCAGGCAACTG
CTCTGTAGGTGGAAGCGATAGCGCCTGCTGTCTGTGCGTCCCTCTCTTCG
AAAAGTGGAGGTTCCTCCGCACGGGTACAGCCAGTACCACACAAGACAAC
AAGCGGCTGGAGGGGCCTTCACGCAACATACCAGATAAAGACTGAAATAT
TTTGGATTTTTGACTTGTTTTTTATGTGGTTCCTGTGTTACCTTACCAGA
GGTGGCGACAAGTACGTGTAGCGCGCAATCAATTATGAACCTCTTTGTTT
CCAAGACCAAACCACTCTAGCGTAAGCTGTTTGAGCCCCCCCCTCCCCTA
TTCCTCTTTTCCCGAAATACACTCCTAACTGCTACGGTAGTTTCAACAGC
AACTCGTTGAATGGCAAGCGATACATGGAGCCATATTGGTCGGGGGCCCG
CTTATTCTCCGCGCAGCCGGCCCACAGCTGTCGAAACCTTCTCAACGCAC
GAGCTACTGTCCTCTGCGCTCTGCTCGCATGTAGTCGTTCGCCACGCCTA
ACAATCCATCACCACCACGCGGTGCTATGGTTTCGCTAGTAGTTCATCCC
CCCCACCTCCCCTACCTCCCTGCTTCCCGACCCAGCTGCTGCTATATACG
GCTGCTAGAGCCACAGACGACGCACCATTCCGCCCCGGCTACTCATCCTC
TCGTTCATTCTCTGTTCCCTCCCTTGGCTTTCCCTTGCCGCGGCGAACAG
GCGTCCCCTTCCCCCGCCCCCAAAAAGCCTAGATTCATGGGAAAGCTTGT
CGCGGCCGCCCGCCCCGTGAAGGCCGGGGCGGTGGCTGCAGCTTCAACAG
CCAGGGCCGCGGGTTCCGGGCCGAAAGCGAGTACCGGCGACAAAGGCACA
GCGGCAGCGAAGGACCCTGACGGGAGCGGCGCTGATGCTGGGACGGGCGG
CGGGGCGAACGGTGGCAATAAG GTACGCTTTGTTGCTGGTGAATCATGTC
TCAACCATTCAAAATCCAGGAAGGAACTACGTATGTTGCACTCAAGAGGA
AAAGAGGTCACTCAGTCTAAAAGAGAGATAGCATGAGTCTTCGTACTGAC
AGTCGTAAAATTTAGTGGGAATTCGGGGTCCTCGGTACCCACTTGGAGAG
AGCGCAAGCTTGGAAAATGCTAGGTTGGCGTACTTATCCGTGTGATGTGA
CTTCTGGGCCCAACCTACTGTATAGCGACACCGACACCTTAGCGCACACC
ACGCAGCAAGCAGCCAATGAACCTCAAGCTTGCAGAGGGCGAGAGGGTTT
GTACAGCTGTCGAGTGAAACGGGAGGTGTAACCGATCGATTCATCGATCG
CTGACCGTGCTACCAGGATTCGCAACTGAAAGCGTCTGCCTGGTTTGGAA
TACCATGGTGCTACGGGCCGGAACGTACGAGCACTTTTCTTTTCTTTTTG
ACCTGCTAAAACGTCAAGAGACCCTACTGCTGTAGGGTCCTCTTGGAGGA
ATGCAACTGTTCCTGTCGTATGGCACGGGTATCGTGGCGTTGTTGAAGAA
TACCTGGTACTCCCTTATTTGATACTCAAGCCGTTCATTTCCTGGCACTG
CTGTACATGTGTTTTTCTCTGGTGTTCCTGGACTTGGAACCAACTCCGAC
AAGTCCCAACCGTGTTTGGTCAAGCAGTCAACCTTCCTTTGCCGAGTTGC
ATAGAACTGAGTGCGGTACGCGTGAAGGTTTGTTGTTCGGCAGCGTCCGC
ACATACAAACCCGGTTATCGATCCCCCGATGACCCCCGTTCCCTTCTCTA
CCCTCCCCCCGTGTCGTGGCGTTTGCTCTGCTTCCCTGACTGTCATTGGT
TCCCTGCCAAACCGTCTCGGCTGCGTACCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCCC
CCCCCTATAACACATGTTGTAACCGTATGAAGACAACCAACGGGAAAAAA
ACAACACGGCCATCGCCAGACTCTTCGGGTAAGGGTAAGGGTGGCAAGGG
AGAGACCACCAAGACCGGAGGGGGGGGCAAGGGCAAAGAGGGTGTAAAAG
ACGGGAGCGGGGCGGCGAGAGGAGGGGCGGGTGGGGCAAGCGAAAGGACC
CCAGCAGACGGGGGAGACGAGAATGGTGCCGGTTCGAAAGACGACGAAGA
AATGGTCGGTTTCGGGGGGTCCGGAGGGGTGGCGAAACAGCAAGCTGGCA
TGGACATGCACAACAACCCATCCCAGATGGGGGGAGGGGGCCCTGGCACG
ATGCCGGGCAACAACAACGGGATGCATATGGGGGCCCCGCCGCCGGGGAT
GAGGGGTAACATGGGCATGATGGGGGCTGCAAATGGAATGGCTGGTTTCG
GGGGTGGTGGTGGGTATGGCATGCCACCGCCTGGAATGGGGATGAACATG
GGGGTGCCGCCGGGAATGAATATGGGGATGCCTCCTGGGATGAACATGGG
AATGCCTCCTGGGATGGGAGGGCCAG GTGAGCTACCTTCCAGTTAGTGGA
TTAGGTGCCAAGGTAGATGTTGAGATTTTCTGGGATAGGGGTGGCCAATC
CACCGCAGGCTTTGTGTGGCTATGGAGCGGGTATGTTACCGCATATAACG
TGCGAGACCCTCGTCGATCGCTTACGTCATCACACAAGAGGTCCTGTATT
GCGTATTTGGACCATCCCTATGTTACGCCCCCCTCCCTCAGTCCAAGCCC
ACCTCCTCTTGTGTCTGTCCGGTAACACACGTGGAATGTCCTCGAAGTCC
GACCCTGATGAAGCCTGCTTTTTCTTCCCCCTTGGCTTGAAACCTGCCAA
GCTTGCAGCTGTCGGTATCTATCTATCCTTCGGGTGTCCGCTGCAATTTT
TCTAGAGCCTGTCAACATGCTCGCCTATTCCTTTATCTTCTTGCCTGTGA
GGTGTAAACGGAGAAGACCACACCCGCCACCGTGACCATGCCAAAACAAT
CCTGTATCTCTCGCTCTCAAGCCCTATCCCCCCTCCAGAACATGCATCAA
CTGCCGCCCCCCCTCCCCCTAGCAACCCATACCCTGTTCCGTCGCTCTCC
TGTACCCTGTTTTCGTGAGAGTCGTGCCGTGACCCTCCGGTCGTCACGAA
GGCCGCTGGCTTTCCCGTCACAACCCGCTTACCTGCATGGTTGACCCCCT
CGTTGCTACATTCTTCGATCTGCACCCCATTGGTTGGATGAGCTCAAGTC
AGATCAGAATGCGCTCTGAGCTTGGAGGTGTTGTTTCACCTGTACTAAAT
ACAGCATCGGAACCATCTTTTGGTTTTTCAGTAGGTAAGCTTGCGAGGAT
TTCCGACTCGAATCCGAGGGGGTGCGAAATCGGCTCCAGTTTTTGAGTAA
GGGGGTTGATTTCGCCCTTGCCTTTTTGTCAGTTTTGCCAGAATTCTCAC
CGTTTGTTGTTCACCTACAGCAGTACCGCGTGCACCCGGAATACGATGTC
GCCAAGACGGGGAATCTATCCACTTCCCCGTGGTCACCTCATGCACAACC
TGAGGTCATCAACACAGGAGGGAGCTCACCATTTCACCATTTCCCTGTGG
TAACCGCACCCCTCAAGCAACAACCTTTTGTTTCTCCGCAACCCCGTTTG
CCAGGACCCTACCCTGACGGCAGCATGGGGTACGGCTACGGTGGCCCAAT
GAACGGGATGATGCCAGGGGGGCCGGGACCTGGTATGGGGGGTTCGGCGG
CTGGGAGCGGGGCAGAGGGGGGGGCGGCCGCGGCGGCCGCGGCCGGTGGA
AAAGACAAGGTTGCCAAGGCGAAAGCGGAGTCGTCCAACAAGTTTAAGAG
GGTGGCAGGGGGGAAGAGCTGGGAGGATGAGACCCTGGCAGAGTGGCCCG
AAA GTGAGTTGAATGCATAGGGTGAGCGGCGGACGGCGGTTACCATTGTT
TTTGGTTTCCACTCCGAGATCGTTTCTCCTATCGCACGAAAGCATGTTTC
TTTGTGTTCCCCTCACCCCTCCTTCCGTTGCTCGGGAGGTTTTCGAGAAA
TTGGCGACAATGTCTGGTTGTCCTTTGTAGAAGAGGTTTGGGAGCCAGAC
TACATTGTTCTCAAGTTCGCCTGCCCCGCCCCCCCTGCCTCTCCCCGAAC
CGACACCGCGCAGACAATGTCTGGTTGTCCTTTGTAGAAGAGGTTTGGGA
GCCAGACTACATTGTTCTCAAGTTCGCCTGCCCCGCCCCCCCTGCCTCTC
CCCGAACCGACACCGCGCAGACGACTACCGGCTTTTCGTGGGAGATCTCG
GGAATGAGGTCACGGACGACAACCTGGCGGGGGCTTTCCGCAAGTACACT
TCTTTCGCGAAGGCGAAGGTCATCCGTGAGAAGTGGAACAAGAAGTCGAA
AGGCTACGGCTTCGTCAGCTTCTTGGACGG GTAAGACGTGCTGCTGCTGT
GCCGCTTGTTGTGCCACTTTTCGTCGCCAACGTCGTCGTCGTTGTCGTTG
TTCCATCATTTTTGGATCCCTACAACGGACTTTCTAACGATGTCAAGACC
CGGGGCACGTGTTTTAGAGGTTGATATTTTGTTGCCTTTTCTTTGCGTAT
AGCTCAAGTCGTCCTTTTGTCATGTGAATGACCGCTCTGACCCTCGACCA
TTTTTCTCGCTGCTGCCTTTGATGTGTGCACATGGTGAGGCAGTATGGAT
ATGCTCAAGGCCTTGCGAGAACAACAAGGAAAATACCTGGGCAACAGACC
AATGAAGATCAGCAAGAGCACGTGGAAAGAACGGGATGTCAAAGAG GTAC
GTTGTGCGGTTGCATGTAGCTGCCATTGAAACAACTGATAATGTGGATTT
TGCCGCGTAAGGTTCTCTGCACGCGACCGCCTTCGTTCTTGAGACCACGA
CAAGATTCCCGCAAAGCTTCTCTCCGAAATGTCGTTTTTTGTGTGTTACT
GTTGGTGATTTGGCAGAGTAGGCCAATGGAAACACAGCCGTTGTGCCTGT
GGAACATTCATCGGGGACAGGCTGCGAACCACTCTGTTTTCGTCCCCTGC
CTCTAGCTTCCGGTTTGGAGCTCTTTGGCAGCGAAAAGAAAGCTGGCTAT
GGTTCCCAGTGGCCTGAACGCAGAGTTTATCAAACGAAACAAAGAAGTGA
AGTACGAGGTTCCGCCAGCACTCACCTCTATCACCAACAGGCCTTGGGTG
ACGTGTTCCCTGTCGTTACAGCATTGCTGTCAGGTGTTAGGTTAGTAAAC
GTCGACGTTACGCTGGCACCACCGCCCACCCTCATGCTCGAGCAATCATC
GACTCGGAGGCACATTAACCAGTAAAGCAGGGACCTCGTAGTGGACCTGG
ACAGATTGCTAACTTAACCCCGCCGCACCATTGCGATGCGTCTCCTGTGA
GGCTATGAGGCAACGCTGCCAACCCAATGCGCTAAACGGAAACCAGCGCA
GCAGTGGCTCGTCATTCTCTAGAGGCTCCGCAGTAGCGAGACTTGCCAAA
ACAGAACTCGACAGCCGTGGACAGAAGTGGTCGCAGTGGTTCAGCGGCCG
AGGGTCATGTGATCGTACTTGTAGTTGTCGCATTTGAACCAGCTAGAGAA
TGGGCCAGGTATGACGGCTGCGCAAGAGGATACCAGGAATCCACCTGGAT
GCGGTACTCGCTTCTCTGGTGTTAAGGAAGGAGGTCACGGCTTCATCGGT
GCACAATCTATGTACTTGTACGCACAACCATGCAGACTCACCGCGGAGGC
AGGTTCGGTTGTTCCAATATTTGGCTCACGTCCTCAATCTCCGGTTTTTC
GTTCGTCCGTTCCATCGATTTTTTTCAGGTAAAGAAGAAGACCAAGCGAG
CCAAAAAGGTAAAGAAAGCTCTTGGTCATTTATAG TTCGCGCTCCTGCAA
CATCGTCCTCTTGTTTTGAGCGAGCAGACTTGTTGCTGATGGGCGGCTCG
GGTCGTGGCTGTTCGGTGTCCGCCCAATGGTTGGCATCGACTGCTTCTGC
TTGGTGTGATGGCGCGGTTGTCGGGTGATGCAGTTGGTGTGATCCCGTCC
TTTGGCGAATACCACAAATCCTGTGGTTGATGGGTAGACAGATCAGCCAT
GTTATGCCGCACTGCAGCATCATTTCCGGGCTTCGGTGGGACGTAGCCGC
GTTTGTAGTAACCGGTTTGTTTGACTTCAATTGCAGCAGCACCCGTCCGG
CTTGAACACAATCGGCCTGAAGATCGGCCTCCTCTTGGACCGGCTCATGC
AGGATGGGGGAAGTTGGAAAATTGATGAGGATTATTAGTCGTTTTAGTTT
AACGTGATTAGAAGGCACACTGAACGTGCATTCGACGCATTTCACAGTTA
GTCATGAGGGGAACGTGCCGGCAGGTTGCTTGTCCGCAACGAGGTCTTCC
TGCGCGATAAATCTCCGGCTGGCCACGACTCCGTTTTGCACAAGAGGATC
AGATACTTCTGACACGTGGGGTCGCCGAACACTCGTGGATAACTCGAATG
ACTGGACATATGTTTGGTGGCGGGGCAATCTGTGACAAATGAGGCTGCTT
TTTATAGTCTGG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:46591..53952-
>mRNA_E-siliculosus-1a_F_contig106.427.1 ID=mRNA_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:46591..53952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGCGGACGAGGATGCTCTTTTCGCCGAGTTCATGGGTGAGATCAAGAG CACGGTCGTGGCAGCGGAGACAAAAACAGCAGCTGATGCTGGGGAAGATG ATGGTGCTGCTTCTGATGCGGCTTCGGTGGGGGACGTCAAAGCCGACGAC GCCGAGGGAGGAGGAGAAGGGAGGAACCACGCCGATACCACCAAGCGAAG AGGAGAGACCGAGATGGCGGACGAGGATGCTCTTTTCGCCGAGTTCATGG GTGAGATCAAGAGCACGGTCGTGGCAGCGGAGACAAAAACAGCAGCTGAT GCTGGGGAAGATGATGGTGCTGCTTCTGATGCGGCTTCGGTGGGGGACGT CAAAGCCGACGACGCCGAGGGAGGAGGAGAAGGGAGGAACCACGCCGATA CCACCAAGCGAAGAGGAGAGACCGAGGCGTCCCCTTCCCCCGCCCCCAAA AAGCCTAGATTCATGGGAAAGCTTGTCGCGGCCGCCCGCCCCGTGAAGGC CGGGGCGGTGGCTGCAGCTTCAACAGCCAGGGCCGCGGGTTCCGGGCCGA AAGCGAGTACCGGCGACAAAGGCACAGCGGCAGCGAAGGACCCTGACGGG AGCGGCGCTGATGCTGGGACGGGCGGCGGGGCGAACGGTGGCAATAAGGC GTCCCCTTCCCCCGCCCCCAAAAAGCCTAGATTCATGGGAAAGCTTGTCG CGGCCGCCCGCCCCGTGAAGGCCGGGGCGGTGGCTGCAGCTTCAACAGCC AGGGCCGCGGGTTCCGGGCCGAAAGCGAGTACCGGCGACAAAGGCACAGC GGCAGCGAAGGACCCTGACGGGAGCGGCGCTGATGCTGGGACGGGCGGCG GGGCGAACGGTGGCAATAAGACAACCAACGGGAAAAAAACAACACGGCCA TCGCCAGACTCTTCGGGTAAGGGTAAGGGTGGCAAGGGAGAGACCACCAA GACCGGAGGGGGGGGCAAGGGCAAAGAGGGTGTAAAAGACGGGAGCGGGG CGGCGAGAGGAGGGGCGGGTGGGGCAAGCGAAAGGACCCCAGCAGACGGG GGAGACGAGAATGGTGCCGGTTCGAAAGACGACGAAGAAATGGTCGGTTT CGGGGGGTCCGGAGGGGTGGCGAAACAGCAAGCTGGCATGGACATGCACA ACAACCCATCCCAGATGGGGGGAGGGGGCCCTGGCACGATGCCGGGCAAC AACAACGGGATGCATATGGGGGCCCCGCCGCCGGGGATGAGGGGTAACAT GGGCATGATGGGGGCTGCAAATGGAATGGCTGGTTTCGGGGGTGGTGGTG GGTATGGCATGCCACCGCCTGGAATGGGGATGAACATGGGGGTGCCGCCG GGAATGAATATGGGGATGCCTCCTGGGATGAACATGGGAATGCCTCCTGG GATGGGAGGGCCAGACAACCAACGGGAAAAAAACAACACGGCCATCGCCA GACTCTTCGGGTAAGGGTAAGGGTGGCAAGGGAGAGACCACCAAGACCGG AGGGGGGGGCAAGGGCAAAGAGGGTGTAAAAGACGGGAGCGGGGCGGCGA GAGGAGGGGCGGGTGGGGCAAGCGAAAGGACCCCAGCAGACGGGGGAGAC GAGAATGGTGCCGGTTCGAAAGACGACGAAGAAATGGTCGGTTTCGGGGG GTCCGGAGGGGTGGCGAAACAGCAAGCTGGCATGGACATGCACAACAACC CATCCCAGATGGGGGGAGGGGGCCCTGGCACGATGCCGGGCAACAACAAC GGGATGCATATGGGGGCCCCGCCGCCGGGGATGAGGGGTAACATGGGCAT GATGGGGGCTGCAAATGGAATGGCTGGTTTCGGGGGTGGTGGTGGGTATG GCATGCCACCGCCTGGAATGGGGATGAACATGGGGGTGCCGCCGGGAATG AATATGGGGATGCCTCCTGGGATGAACATGGGAATGCCTCCTGGGATGGG AGGGCCAGGACCCTACCCTGACGGCAGCATGGGGTACGGCTACGGTGGCC CAATGAACGGGATGATGCCAGGGGGGCCGGGACCTGGTATGGGGGGTTCG GCGGCTGGGAGCGGGGCAGAGGGGGGGGCGGCCGCGGCGGCCGCGGCCGG TGGAAAAGACAAGGTTGCCAAGGCGAAAGCGGAGTCGTCCAACAAGTTTA AGAGGGTGGCAGGGGGGAAGAGCTGGGAGGATGAGACCCTGGCAGAGTGG CCCGAAAGACCCTACCCTGACGGCAGCATGGGGTACGGCTACGGTGGCCC AATGAACGGGATGATGCCAGGGGGGCCGGGACCTGGTATGGGGGGTTCGG CGGCTGGGAGCGGGGCAGAGGGGGGGGCGGCCGCGGCGGCCGCGGCCGGT GGAAAAGACAAGGTTGCCAAGGCGAAAGCGGAGTCGTCCAACAAGTTTAA GAGGGTGGCAGGGGGGAAGAGCTGGGAGGATGAGACCCTGGCAGAGTGGC CCGAAAACGACTACCGGCTTTTCGTGGGAGATCTCGGGAATGAGGTCACG GACGACAACCTGGCGGGGGCTTTCCGCAAGTACACTTCTTTCGCGAAGGC GAAGGTCATCCGTGAGAAGTGGAACAAGAAGTCGAAAGGCTACGGCTTCG TCAGCTTCTTGGACGGACGACTACCGGCTTTTCGTGGGAGATCTCGGGAA TGAGGTCACGGACGACAACCTGGCGGGGGCTTTCCGCAAGTACACTTCTT TCGCGAAGGCGAAGGTCATCCGTGAGAAGTGGAACAAGAAGTCGAAAGGC TACGGCTTCGTCAGCTTCTTGGACGGTATGGATATGCTCAAGGCCTTGCG AGAACAACAAGGAAAATACCTGGGCAACAGACCAATGAAGATCAGCAAGA GCACGTGGAAAGAACGGGATGTCAAAGAGTATGGATATGCTCAAGGCCTT GCGAGAACAACAAGGAAAATACCTGGGCAACAGACCAATGAAGATCAGCA AGAGCACGTGGAAAGAACGGGATGTCAAAGAGGTAAAGAAGAAGACCAAG CGAGCCAAAAAGGTAAAGAAAGCTCTTGGTCATTTATAGGTAAAGAAGAA GACCAAGCGAGCCAAAAAGGTAAAGAAAGCTCTTGGTCATTTATAG back to top