mRNA_E-siliculosus-1a_F_contig1059.420.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A398CV69_9BACL (Uncharacterized protein n=1 Tax=Cohnella faecalis TaxID=2315694 RepID=A0A398CV69_9BACL) HSP 1 Score: 275 bits (702), Expect = 4.750e-83 Identity = 146/351 (41.60%), Postives = 207/351 (58.97%), Query Frame = 1 Query: 1 MSFTCPKLSDNSAEGSPAVPGIFISAGLQHYKEGGTPVDLSYHIGTDNLACWEDGSRDNGSLTCDQTRMAAWTRALVSVQNPTKFELTYVDKWSDSDSEPSR-VWSKLPVSVPPGG-RRIVTLNNNDRAGLYYRAM--LGDQEKGYVTMSFTCPKASHNSAEGSSFETGV-LLDAGLQKYERSGTPVNFTYIVGQKNLAGWNSGTSDSGIKACDQTQLNG-RAKIVVRNDTEYEVVSTHHW-DESGGSEGWYFNP--DGPIPSKAQKLLVLSTSDRAGIYYVQNDLEYHLSFTCPKLSHNSAEGSDDSGLQHYEDTGTPVLFEYKLGTKNLACWRNGKSDNGHIVVSKTKV 1026
MSFTCPKLS NSAEGSP G F+SAGLQ Y E G P++L+Y +GT N ACW GS ++G + C QT + + ++N ++L + W+D+ + S W+ P VPP G +R + L ++D+AGL+ + + G + G+ MSF SAEGS ++ L+ AGLQ+Y R + Y +G+ N A WN G S+ G C+QT RA I + N + +W D GG+ WY P D +P +++ VL +DRAG+Y+ N +E+H+SFTCPK+S NSAEGS +GLQ Y +GTPV F Y++GT NLACW +G S++G V +T V
Sbjct: 1 MSFTCPKLSSNSAEGSPG-SGSFVSAGLQAYSESGHPLNLTYSVGTTNAACWSSGSSNDGEIKCSQTEFED-AKLTIRIKNENNYQLKFCGYWNDNSNGASNWYWAPGPRDVPPPGCKRTIYLLDDDKAGLFLKVLDTNGLDQLGFANMSFQ--NGGTPSAEGSPDDSNNGLVAAGLQRYHRDVVAASLEYQIGESNRACWNHGDSNDGSTTCNQTTFKDKRALIFIENTIPETLTFVKYWNDNKGGAGNWYIEPNADDTVPPDCKRIFVLKDNDRAGLYFKMNYIEFHMSFTCPKMSSNSAEGSPHTGLQTYSGSGTPVTFTYRVGTPNLACWSSGTSNSGKTVCPQTLV 347
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A0N8Q4B4_9GAMM (Uncharacterized protein n=1 Tax=Pseudoalteromonas sp. P1-9 TaxID=1710354 RepID=A0A0N8Q4B4_9GAMM) HSP 1 Score: 199 bits (506), Expect = 8.140e-54 Identity = 103/215 (47.91%), Postives = 132/215 (61.40%), Query Frame = 1 Query: 1 MSFTCPKLSDNSAEGSPAVPGIFISAGLQHYKEGGTPVDLSYHIGTDNLACWEDGSRDNGSLTCDQTRMAAWTRALVSVQNPTKFELTYVDKWSDSDSEPSRVWSKLPVSVPPGGRRIVTLNNNDRAGLYYRAMLGDQEKGYVTMSFTCPKASHNSAEGSSFETGVLLDAGLQKYERSGTPVNFTYIVGQKNLAGWNSGTSDSGIKACDQTQLNG 645
MSFTCPK S NSAEGSP G+ I +GLQ Y E GTPV +Y+IGT N+ACW DG+ D+ + C QT + W R LVSV N L W + W+K P S+P GG+ I LN+NDRAGL + +L + + M+FTCPK+S NSAEGS AGLQ+Y GTPVN +Y++ + N A W+SGTS++G C QT L+G
Sbjct: 71 MSFTCPKSSSNSAEGSPNSEGVLIQSGLQRYNEHGTPVSFTYNIGTPNMACWSDGTTDDANPVCPQTTLEEWARVLVSVDNTKAVPLHLESTWQNGP------WTKEPTSIPAGGKGIFLLNDNDRAGLQF--LLNNNIP--INMAFTCPKSSSNSAEGSPL-------AGLQQYAEHGTPVNLSYVISEVNQACWDSGTSNNGKVECSQTLLSG 268
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A398CPC6_9BACL (Uncharacterized protein n=1 Tax=Cohnella faecalis TaxID=2315694 RepID=A0A398CPC6_9BACL) HSP 1 Score: 168 bits (425), Expect = 8.840e-44 Identity = 88/212 (41.51%), Postives = 122/212 (57.55%), Query Frame = 1 Query: 406 GDQEKGYVTMSFTCPKASHNSAEGSSFETGV-LLDAGLQKYERSGTPVNFTYIVGQKNLAGWNSGTSDSGIKACDQTQLNG-RAKIVVRNDTEYEVVSTHHW-DESGGSEGWYFNP--DGPIPSKAQKLLVLSTSDRAGIYYVQNDLEYHLSFTCPKLSHNSAEGSDDSGLQHYEDTGTPVLFEYKLGTKNLACWRNGKSDNGHIVVSKTKV 1026
G + G+ MSF SAEGS ++ L+ AGLQ+Y R + Y +G+ N A WN G S+ G C+QT RA I + N + +W D GG+ WY P D +P +++ VL +DRAG+Y+ N +E+H+SFTCPK+S NSAEGS +GLQ Y +GTPV F Y++GT NLACW +G S++G V +T V
Sbjct: 6 GLDQLGFANMSFQ--NGGTPSAEGSPDDSNNGLVAAGLQRYHRDVVAASLEYQIGESNRACWNHGDSNDGSTTCNQTTFKDKRALIFIENTIPETLTFVKYWNDNKGGAGNWYIEPNADDTVPPDCKRIFVLKDNDRAGLYFKMNYIEFHMSFTCPKMSSNSAEGSPHTGLQTYSGSGTPVTFTYRVGTPNLACWSSGTSNSGKTVCPQTLV 215
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A398CPS6_9BACL (Uncharacterized protein n=1 Tax=Cohnella faecalis TaxID=2315694 RepID=A0A398CPS6_9BACL) HSP 1 Score: 105 bits (262), Expect = 4.020e-24 Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1 Query: 1 MSFTCPKLSDNSAEGSPAVPGIFISAGLQHYKEGGTPVDLSYHIGTDNLACWEDGSRDNGSLTCDQTRMAAWTRALVSVQNPTKFELTYVDKWSDSDSEPSR-VWSKLPVSVPP 339
MSFTCPKLS NSAEGSP G F+SAGLQ Y E G P++L+Y +GT N ACW GS ++G + C QT + + ++N ++L + W+D+ + S W+ P VPP
Sbjct: 1 MSFTCPKLSSNSAEGSPG-SGSFVSAGLQAYSESGHPLNLTYSVGTTNAACWSSGSSNDGEIKCSQTEFED-AKLTIRIKNENNYQLKFCGYWNDNSNGASNWYWAPGPRDVPP 112
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A1J5UND5_9GAMM (Uncharacterized protein n=4 Tax=Bathymodiolus thermophilus thioautotrophic gill symbiont TaxID=2360 RepID=A0A1J5UND5_9GAMM) HSP 1 Score: 64.7 bits (156), Expect = 4.140e-9 Identity = 46/119 (38.66%), Postives = 60/119 (50.42%), Query Frame = 1 Query: 646 RAKIVVRNDTEYE--VVSTHHWDE--SGGSEGWYFNPDGPIPSKAQKLLVLSTSDRAGIYYVQNDL--EYHLSFTCPKLSHNSAEGSDDSGLQHYEDTGTPVLFEYKLGTKNLACWRNG 984
R K+ + N+T V+ T+ E SG G P I V S++DR + D + + TCPK SHNSA G +SGLQ Y TGTPV FE+ LG+ +LA W NG
Sbjct: 9 RVKVKIINNTHRNEVVICTNVRCEKLSGLKAGDKIQPGKTIE------CVSSSNDRIFFEFRGEDSGDAFMMGCTCPKSSHNSACGYGNSGLQCYSRTGTPVSFEFHLGSPDLADWNNG 121
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A1J5UIK0_9GAMM (Uncharacterized protein n=4 Tax=Bathymodiolus thermophilus thioautotrophic gill symbiont TaxID=2360 RepID=A0A1J5UIK0_9GAMM) HSP 1 Score: 62.8 bits (151), Expect = 2.060e-8 Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 1 Query: 748 GPIPSKAQKLLVLSTSDRAGIYY---VQNDLEYHLSFTCPKLSHNSAEGSDDSGLQHYEDTGTPVLFEYKLGTKNLACWRN 981
G + K+ V STS+ + Q + + TCPK S+NSA G +SGLQ Y+DTGTPV F + LG N A W N
Sbjct: 42 GDLIQSGDKISVTSTSNNRIFFEFEGAQTKYLFQIGCTCPKSSNNSACGYGNSGLQCYQDTGTPVSFVFHLGKTNKADWDN 122
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: UPI00168A1AD4 (hypothetical protein n=1 Tax=Pseudanabaena sp. FACHB-1050 TaxID=2692857 RepID=UPI00168A1AD4) HSP 1 Score: 58.9 bits (141), Expect = 7.110e-8 Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 442 TCPKASHNSAEGSSFETGVLLDAGLQKYERSGTPVNFTYIVGQKNLAGWNSG 597
TCP++S NSA GS +AGLQ YER GTPV FT+I+GQ N A WN G
Sbjct: 2 TCPRSSRNSACGS-------YNAGLQPYERRGTPVTFTFILGQPNEADWNHG 46
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Match: A0A2A5D9Y6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5D9Y6_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 7.640e-8 Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 Query: 367 NNDRAGLYYRAMLGDQEKGYV-TMSFTCPKASHNSAEGSSFETGVLLDAGLQKYERSGTPVNFTYIVGQKNLAGWNSGTSDS 609
+NDR + A+ G+ G + TCPK+SHNSA+G TG LQKY+ GTPV FT+ G N+A W G+SDS
Sbjct: 41 DNDRCYAQFEALKGNVGTGVLYQFGMTCPKSSHNSADGYDGLTG------LQKYKEDGTPVVFTFNFGDVNIASW--GSSDS 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1059.420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1059.420.1 >prot_E-siliculosus-1a_F_contig1059.420.1 ID=prot_E-siliculosus-1a_F_contig1059.420.1|Name=mRNA_E-siliculosus-1a_F_contig1059.420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=375bp MSFTCPKLSDNSAEGSPAVPGIFISAGLQHYKEGGTPVDLSYHIGTDNLAback to top mRNA from alignment at E-siliculosus-1a_F_contig1059:4218..5898- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1059.420.1 ID=mRNA_E-siliculosus-1a_F_contig1059.420.1|Name=mRNA_E-siliculosus-1a_F_contig1059.420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1681bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1059:4218..5898- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1059:4218..5898- >mRNA_E-siliculosus-1a_F_contig1059.420.1 ID=mRNA_E-siliculosus-1a_F_contig1059.420.1|Name=mRNA_E-siliculosus-1a_F_contig1059.420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2250bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1059:4218..5898- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |