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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: A0A6H5KF95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF95_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.340e-35 Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1 Query: 22 GATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHPRRGSGLV-RGDADTKRLMKQHIRCLLEGGARIIEVHSASATEHFIDALEEMGT-GGSHDLRV 357
G RNNVRWPGLDG +PDQC +AHYLY+V +R LDGVLIVDASGV PR G RGDA T +K HIRC LEG ARI+EVH+A AT F+DALE GGSH +RV
Sbjct: 47 GVEVCRNNVRWPGLDGHAIPDQCTSAHYLYQVSNRGGLDGVLIVDASGVAAPRGWIGASERGDAGTTNPLKPHIRCFLEGRARIVEVHNARATARFVDALEGRAVAGGSHGVRV 160
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: D8LH22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH22_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16 Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 19 DGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHP 177
DG WR NVRWP LDG +PDQC TAHYLY+V DR LD VLIVDASGV P
Sbjct: 59 DGIKVWRINVRWPSLDGHAIPDQCTTAHYLYQVADRGGLDDVLIVDASGVAPP 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 0 |
Stop | 0 |
Cds size | 924 |
Model size | 926 |
Exons | 2 |
Ec32 ortholog | Ec-06_010930.1 |
Ec32 ortholog description | hypothetical protein |
Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10572.412.1 >prot_E-siliculosus-1a_F_contig10572.412.1 ID=prot_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp
RACFRIDGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLI VDASGVGHPRRGSGLVRGDADTKRLMKQHIRCLLEGGARIIEVHSASATE HFIDALEEMGTGGSHDLRVPFGSSIVRAHVFFDVPCVGGQGWDTVVVIGT NHHCMMRTPLNAASIVRRQIFASALGGRQLDPEQVDKLWGMVAGATMTNE EWTENYATLLEELSPEELAVFDRFKEQHAEDMNSAWVSLISHRGGKNSWM GQTAGKTVAGSAEKVAAAEQALPAAKTRARRAAAKEALKAATAEHDMVTG AREHQSDG back to topmRNA from alignment at E-siliculosus-1a_F_contig10572:113..1567+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CGTGCGTGCTTCCGCATCGACGGGGCCACGGCCTGGCGTAACAACGTGCG
CTGGCCGGGCCTGGATGGGAAACCCCTCCCCGACCAGTGCGCCACCGCGC
ACTACCTGTATGAGGTGGTGGACAGATGCGCCCTGGATGGCGTCCTTATC
GTCGACGCTTCTGGGGTCGGGCACCCTCGGCGTGGATCGGGGCTAGTGAG
GGGTGATGCCGACACAAAGCGTCTGATGAAGCAGCATATTCGGTGCCTCT
TGGAAGGCGGGGCCCGCATCATCGAGGTCCATAGCGCCAGTGCGACGGAG
CACTTTATCGATGCCCTAGAGGAAATGGGCACCGGTGGGTCGCACGACCT
GAGGGTCCCGTTCGGCAGCTCGATCGTACGGGCGCACGTCTTCTTCGACG
TCCCGTGTGTGGGAGGCCAGGGGTGGGATACGGTTGTCGTAATAGGCACC
AACCACCACTGCATGATGAGGACGCCGCTGAACGCCGCCTCCATCGTCAG
GCGCCAAATTTTTGCGTCCGCGCTCGGAGGGAGACAGCTCGACCCCGAGC
AGGTAGACAAGTTGTGGGGCATGGTGGCCGGAGCCACCATGACCAACGAG
GAATGGACCGAGAACTACGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGA
GCTCGCCGTTTTCGATCGCTTCAAGGAGCAGCACGCGGAGGACATGAACA
GCGCGTGGGTGAGCCTCATCAGCCACCGGGGGGGTAAGTGCCGGCAAGAG
AAGGCAGTGTTGTCGGTGGAGCTTGGGAGATGTTGTTGTTGGTGCTGCTG
TTGTTGGGGGGTAAGCGGCCTTCTTTGATGTGTCGATTTCGGATTGCTCA
TGCGATGACGTTGCTCTGTGTTGGCGCCGATCGTTTGCTTTCCGTCGCCA
CCCCGCGCGAAAGCCCCTCCCCCCCCCGGCCCGGTTGTTTATACTGGCAG
AGTCGCTCGCATGCGTTGTCAAGTAGGACCAAGGCATGTAGGAAAGGGGG
TGAGAGAGATCTGTTGTCACTCAGCGACGCCAAGTCTTGTTGCTTGCGGA
GGTTGTTGATGGTGTTGTTATGGTTGGTTTTGTTGCTGGCACTCGATTCG
GAGCTAAGATGACTATTTCAGTGTCCGGTGCCTGCGGATGGGATGTGCCT
TGTTGAATGTTAATCCGTGCTGTCGTTGCCTCCGTTGTTATTTGCTCGTG
TTCCACATTAACCGCTGTGACTGTCACGTTTCGTACCCCGCGCCGTTTGT
GTACCATGACAGGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAAGACC
GTTGCCGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGCCCGC
CGCCAAGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAGGCGG
CGACGGCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTCCGAT
GGCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10572:113..1567+ >mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CGTGCGTGCTTCCGCATCGACGGGGCCACGGCCTGGCGTAACAACGTGCG CTGGCCGGGCCTGGATGGGAAACCCCTCCCCGACCAGTGCGCCACCGCGC ACTACCTGTATGAGGTGGTGGACAGATGCGCCCTGGATGGCGTCCTTATC GTCGACGCTTCTGGGGTCGGGCACCCTCGGCGTGGATCGGGGCTAGTGAG GGGTGATGCCGACACAAAGCGTCTGATGAAGCAGCATATTCGGTGCCTCT TGGAAGGCGGGGCCCGCATCATCGAGGTCCATAGCGCCAGTGCGACGGAG CACTTTATCGATGCCCTAGAGGAAATGGGCACCGGTGGGTCGCACGACCT GAGGGTCCCGTTCGGCAGCTCGATCGTACGGGCGCACGTCTTCTTCGACG TCCCGTGTGTGGGAGGCCAGGGGTGGGATACGGTTGTCGTAATAGGCACC AACCACCACTGCATGATGAGGACGCCGCTGAACGCCGCCTCCATCGTCAG GCGCCAAATTTTTGCGTCCGCGCTCGGAGGGAGACAGCTCGACCCCGAGC AGGTAGACAAGTTGTGGGGCATGGTGGCCGGAGCCACCATGACCAACGAG GAATGGACCGAGAACTACGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGA GCTCGCCGTTTTCGATCGCTTCAAGGAGCAGCACGCGGAGGACATGAACA GCGCGTGGGTGAGCCTCATCAGCCACCGGGGGGCGTGCGTGCTTCCGCAT CGACGGGGCCACGGCCTGGCGTAACAACGTGCGCTGGCCGGGCCTGGATG GGAAACCCCTCCCCGACCAGTGCGCCACCGCGCACTACCTGTATGAGGTG GTGGACAGATGCGCCCTGGATGGCGTCCTTATCGTCGACGCTTCTGGGGT CGGGCACCCTCGGCGTGGATCGGGGCTAGTGAGGGGTGATGCCGACACAA AGCGTCTGATGAAGCAGCATATTCGGTGCCTCTTGGAAGGCGGGGCCCGC ATCATCGAGGTCCATAGCGCCAGTGCGACGGAGCACTTTATCGATGCCCT AGAGGAAATGGGCACCGGTGGGTCGCACGACCTGAGGGTCCCGTTCGGCA GCTCGATCGTACGGGCGCACGTCTTCTTCGACGTCCCGTGTGTGGGAGGC CAGGGGTGGGATACGGTTGTCGTAATAGGCACCAACCACCACTGCATGAT GAGGACGCCGCTGAACGCCGCCTCCATCGTCAGGCGCCAAATTTTTGCGT CCGCGCTCGGAGGGAGACAGCTCGACCCCGAGCAGGTAGACAAGTTGTGG GGCATGGTGGCCGGAGCCACCATGACCAACGAGGAATGGACCGAGAACTA CGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGAGCTCGCCGTTTTCGATC GCTTCAAGGAGCAGCACGCGGAGGACATGAACAGCGCGTGGGTGAGCCTC ATCAGCCACCGGGGGGGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAA GACCGTTGCCGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGC CCGCCGCCAAGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAG GCGGCGACGGCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTC CGATGGCGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAAGACCGTTGC CGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGCCCGCCGCCA AGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAGGCGGCGACG GCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTCCGATGGC back to top
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