mRNA_E-siliculosus-1a_F_contig10572.412.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: A0A6H5KF95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF95_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.340e-35 Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1 Query: 22 GATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHPRRGSGLV-RGDADTKRLMKQHIRCLLEGGARIIEVHSASATEHFIDALEEMGT-GGSHDLRV 357
G RNNVRWPGLDG +PDQC +AHYLY+V +R LDGVLIVDASGV PR G RGDA T +K HIRC LEG ARI+EVH+A AT F+DALE GGSH +RV
Sbjct: 47 GVEVCRNNVRWPGLDGHAIPDQCTSAHYLYQVSNRGGLDGVLIVDASGVAAPRGWIGASERGDAGTTNPLKPHIRCFLEGRARIVEVHNARATARFVDALEGRAVAGGSHGVRV 160
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: D8LH22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH22_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16 Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 1 Query: 19 DGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHP 177
DG WR NVRWP LDG +PDQC TAHYLY+V DR LD VLIVDASGV P
Sbjct: 59 DGIKVWRINVRWPSLDGHAIPDQCTTAHYLYQVADRGGLDDVLIVDASGVAPP 111 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10572.412.1 >prot_E-siliculosus-1a_F_contig10572.412.1 ID=prot_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp RACFRIDGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIback to top mRNA from alignment at E-siliculosus-1a_F_contig10572:113..1567+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10572:113..1567+ >mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |