mRNA_E-siliculosus-1a_F_contig10572.412.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10572.412.1
Unique NamemRNA_E-siliculosus-1a_F_contig10572.412.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: A0A6H5KF95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF95_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.340e-35
Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:   22 GATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHPRRGSGLV-RGDADTKRLMKQHIRCLLEGGARIIEVHSASATEHFIDALEEMGT-GGSHDLRV 357
            G    RNNVRWPGLDG  +PDQC +AHYLY+V +R  LDGVLIVDASGV  PR   G   RGDA T   +K HIRC LEG ARI+EVH+A AT  F+DALE     GGSH +RV
Sbjct:   47 GVEVCRNNVRWPGLDGHAIPDQCTSAHYLYQVSNRGGLDGVLIVDASGVAAPRGWIGASERGDAGTTNPLKPHIRCFLEGRARIVEVHNARATARFVDALEGRAVAGGSHGVRV 160
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BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Match: D8LH22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH22_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.100e-16
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   19 DGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLIVDASGVGHP 177
            DG   WR NVRWP LDG  +PDQC TAHYLY+V DR  LD VLIVDASGV  P
Sbjct:   59 DGIKVWRINVRWPSLDGHAIPDQCTTAHYLYQVADRGGLDDVLIVDASGVAPP 111
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10572.412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF95_9PHAE1.340e-3562.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH22_ECTSI2.100e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10572contigE-siliculosus-1a_F_contig10572:113..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size924
Model size926
Exons2
Ec32 orthologEc-06_010930.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927559.1256855-CDS-E-siliculosus-1a_F_contig10572:112..8451622927559.1256855-CDS-E-siliculosus-1a_F_contig10572:112..845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10572 113..845 +
1696318585.5828187-CDS-E-siliculosus-1a_F_contig10572:112..8451696318585.5828187-CDS-E-siliculosus-1a_F_contig10572:112..845Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10572 113..845 +
1622927559.1422236-CDS-E-siliculosus-1a_F_contig10572:1374..15651622927559.1422236-CDS-E-siliculosus-1a_F_contig10572:1374..1565Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10572 1375..1565 +
1696318585.605309-CDS-E-siliculosus-1a_F_contig10572:1374..15651696318585.605309-CDS-E-siliculosus-1a_F_contig10572:1374..1565Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10572 1375..1565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10572.412.1prot_E-siliculosus-1a_F_contig10572.412.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10572 113..1565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10572.412.1

>prot_E-siliculosus-1a_F_contig10572.412.1 ID=prot_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=308bp
RACFRIDGATAWRNNVRWPGLDGKPLPDQCATAHYLYEVVDRCALDGVLI
VDASGVGHPRRGSGLVRGDADTKRLMKQHIRCLLEGGARIIEVHSASATE
HFIDALEEMGTGGSHDLRVPFGSSIVRAHVFFDVPCVGGQGWDTVVVIGT
NHHCMMRTPLNAASIVRRQIFASALGGRQLDPEQVDKLWGMVAGATMTNE
EWTENYATLLEELSPEELAVFDRFKEQHAEDMNSAWVSLISHRGGKNSWM
GQTAGKTVAGSAEKVAAAEQALPAAKTRARRAAAKEALKAATAEHDMVTG
AREHQSDG
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mRNA from alignment at E-siliculosus-1a_F_contig10572:113..1567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1455bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGCGTGCTTCCGCATCGACGGGGCCACGGCCTGGCGTAACAACGTGCG
CTGGCCGGGCCTGGATGGGAAACCCCTCCCCGACCAGTGCGCCACCGCGC
ACTACCTGTATGAGGTGGTGGACAGATGCGCCCTGGATGGCGTCCTTATC
GTCGACGCTTCTGGGGTCGGGCACCCTCGGCGTGGATCGGGGCTAGTGAG
GGGTGATGCCGACACAAAGCGTCTGATGAAGCAGCATATTCGGTGCCTCT
TGGAAGGCGGGGCCCGCATCATCGAGGTCCATAGCGCCAGTGCGACGGAG
CACTTTATCGATGCCCTAGAGGAAATGGGCACCGGTGGGTCGCACGACCT
GAGGGTCCCGTTCGGCAGCTCGATCGTACGGGCGCACGTCTTCTTCGACG
TCCCGTGTGTGGGAGGCCAGGGGTGGGATACGGTTGTCGTAATAGGCACC
AACCACCACTGCATGATGAGGACGCCGCTGAACGCCGCCTCCATCGTCAG
GCGCCAAATTTTTGCGTCCGCGCTCGGAGGGAGACAGCTCGACCCCGAGC
AGGTAGACAAGTTGTGGGGCATGGTGGCCGGAGCCACCATGACCAACGAG
GAATGGACCGAGAACTACGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGA
GCTCGCCGTTTTCGATCGCTTCAAGGAGCAGCACGCGGAGGACATGAACA
GCGCGTGGGTGAGCCTCATCAGCCACCGGGGGGGTAAGTGCCGGCAAGAG
AAGGCAGTGTTGTCGGTGGAGCTTGGGAGATGTTGTTGTTGGTGCTGCTG
TTGTTGGGGGGTAAGCGGCCTTCTTTGATGTGTCGATTTCGGATTGCTCA
TGCGATGACGTTGCTCTGTGTTGGCGCCGATCGTTTGCTTTCCGTCGCCA
CCCCGCGCGAAAGCCCCTCCCCCCCCCGGCCCGGTTGTTTATACTGGCAG
AGTCGCTCGCATGCGTTGTCAAGTAGGACCAAGGCATGTAGGAAAGGGGG
TGAGAGAGATCTGTTGTCACTCAGCGACGCCAAGTCTTGTTGCTTGCGGA
GGTTGTTGATGGTGTTGTTATGGTTGGTTTTGTTGCTGGCACTCGATTCG
GAGCTAAGATGACTATTTCAGTGTCCGGTGCCTGCGGATGGGATGTGCCT
TGTTGAATGTTAATCCGTGCTGTCGTTGCCTCCGTTGTTATTTGCTCGTG
TTCCACATTAACCGCTGTGACTGTCACGTTTCGTACCCCGCGCCGTTTGT
GTACCATGACAGGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAAGACC
GTTGCCGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGCCCGC
CGCCAAGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAGGCGG
CGACGGCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTCCGAT
GGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10572:113..1567+

>mRNA_E-siliculosus-1a_F_contig10572.412.1 ID=mRNA_E-siliculosus-1a_F_contig10572.412.1|Name=mRNA_E-siliculosus-1a_F_contig10572.412.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1848bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10572:113..1567+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGCGTGCTTCCGCATCGACGGGGCCACGGCCTGGCGTAACAACGTGCG
CTGGCCGGGCCTGGATGGGAAACCCCTCCCCGACCAGTGCGCCACCGCGC
ACTACCTGTATGAGGTGGTGGACAGATGCGCCCTGGATGGCGTCCTTATC
GTCGACGCTTCTGGGGTCGGGCACCCTCGGCGTGGATCGGGGCTAGTGAG
GGGTGATGCCGACACAAAGCGTCTGATGAAGCAGCATATTCGGTGCCTCT
TGGAAGGCGGGGCCCGCATCATCGAGGTCCATAGCGCCAGTGCGACGGAG
CACTTTATCGATGCCCTAGAGGAAATGGGCACCGGTGGGTCGCACGACCT
GAGGGTCCCGTTCGGCAGCTCGATCGTACGGGCGCACGTCTTCTTCGACG
TCCCGTGTGTGGGAGGCCAGGGGTGGGATACGGTTGTCGTAATAGGCACC
AACCACCACTGCATGATGAGGACGCCGCTGAACGCCGCCTCCATCGTCAG
GCGCCAAATTTTTGCGTCCGCGCTCGGAGGGAGACAGCTCGACCCCGAGC
AGGTAGACAAGTTGTGGGGCATGGTGGCCGGAGCCACCATGACCAACGAG
GAATGGACCGAGAACTACGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGA
GCTCGCCGTTTTCGATCGCTTCAAGGAGCAGCACGCGGAGGACATGAACA
GCGCGTGGGTGAGCCTCATCAGCCACCGGGGGGCGTGCGTGCTTCCGCAT
CGACGGGGCCACGGCCTGGCGTAACAACGTGCGCTGGCCGGGCCTGGATG
GGAAACCCCTCCCCGACCAGTGCGCCACCGCGCACTACCTGTATGAGGTG
GTGGACAGATGCGCCCTGGATGGCGTCCTTATCGTCGACGCTTCTGGGGT
CGGGCACCCTCGGCGTGGATCGGGGCTAGTGAGGGGTGATGCCGACACAA
AGCGTCTGATGAAGCAGCATATTCGGTGCCTCTTGGAAGGCGGGGCCCGC
ATCATCGAGGTCCATAGCGCCAGTGCGACGGAGCACTTTATCGATGCCCT
AGAGGAAATGGGCACCGGTGGGTCGCACGACCTGAGGGTCCCGTTCGGCA
GCTCGATCGTACGGGCGCACGTCTTCTTCGACGTCCCGTGTGTGGGAGGC
CAGGGGTGGGATACGGTTGTCGTAATAGGCACCAACCACCACTGCATGAT
GAGGACGCCGCTGAACGCCGCCTCCATCGTCAGGCGCCAAATTTTTGCGT
CCGCGCTCGGAGGGAGACAGCTCGACCCCGAGCAGGTAGACAAGTTGTGG
GGCATGGTGGCCGGAGCCACCATGACCAACGAGGAATGGACCGAGAACTA
CGCAACCTTGCTTGAGGAGCTAAGTCCGGAGGAGCTCGCCGTTTTCGATC
GCTTCAAGGAGCAGCACGCGGAGGACATGAACAGCGCGTGGGTGAGCCTC
ATCAGCCACCGGGGGGGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAA
GACCGTTGCCGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGC
CCGCCGCCAAGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAG
GCGGCGACGGCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTC
CGATGGCGCAAGAATTCCTGGATGGGCCAGACGGCGGGGAAGACCGTTGC
CGGATCCGCGGAGAAGGTGGCGGCCGCGGAGCAGGCCTTGCCCGCCGCCA
AGACTCGAGCGCGCAGGGCGGCGGCGAAAGAGGCTCTCAAGGCGGCGACG
GCGGAGCACGACATGGTGACGGGGGCCAGAGAGCACCAGTCCGATGGC
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