mRNA_E-siliculosus-1a_F_contig1057.409.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D8LN53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN53_ECTSI) HSP 1 Score: 170 bits (431), Expect = 3.440e-51 Identity = 94/119 (78.99%), Postives = 98/119 (82.35%), Query Frame = 1 Query: 184 MIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEI 540
MIGFASNNALLTVQF LLLAMFIKPML+PQG TQSGGAVYRRVV+RNIVCTVGIACAYVITTVVVVLA+VSTPSDTNK AAVLGHITPSINICVTLCLTE+
Sbjct: 1 MIGFASNNALLTVQFVLLLAMFIKPMLLPQGGTQSGGAVYRRVVVRNIVCTVGIACAYVITTVVVVLAHVSTPSDTNK-------------------AAVLGHITPSINICVTLCLTEV 100
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.150e-49 Identity = 100/158 (63.29%), Postives = 112/158 (70.89%), Query Frame = 1 Query: 91 HLVVS--LLGVDIPG------TACFNRSNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEI 540
+L VS +LG+ PG TACFN EETET EVGD+ GFA NN LLTVQ+ LLLAMFIKPMLV G+TQSGGAVYRRVVIRNIVCT+GIACAYVITTVVVVLA +S+ DT+K AA +G I PSINICVTLCLTE+
Sbjct: 105 YLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTDK-------------------AAAVGDIVPSINICVTLCLTEV 243
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.430e-38 Identity = 76/114 (66.67%), Postives = 84/114 (73.68%), Query Frame = 1 Query: 94 LVVSLLGVDIPG------TACFNRSNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNK 417
+ + LG+ PG TACFN EET+T EVGD+ GFASNN LLTVQ+ LLLAMFIKPMLV QG+TQSGGAVYRRVVIRNIVCT+GIACAYVITT SDTNK
Sbjct: 98 VSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTXXXXXXXXXXXSDTNK 211
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE) HSP 1 Score: 137 bits (345), Expect = 3.590e-37 Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 1 Query: 121 IPGTACFNRSNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKSI 579
+ GT C +E E D +GF NN +L +QFALLLA+F+KP+++PQG TQSGGAVYRR+V+RN+ CT+ I Y +TTV+VVL +++T AP +AA L + P+ NI VTLCLTE++LPLGF+SC+K+I
Sbjct: 68 LEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTT-------------------APGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAI 201
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI) HSP 1 Score: 135 bits (339), Expect = 1.450e-36 Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 94 LVVSLLGVDIP-GTACFNRSNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKSI 579
L + V P G C +E E D +GF NN +L +QF LLLAMF+KP+++PQG QSGGAVYRR+V+RN+ CT+GI Y +TTV+VVL +++T AP +AA L + P+ NI VTLC+TE++LPLGF+SC+KSI
Sbjct: 28 LASQVSSVPSPEGNFCLALDLQENEDVTFSDTLGFVFNNGILVIQFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTT-------------------APGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSI 171
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.100e-36 Identity = 74/153 (48.37%), Postives = 99/153 (64.71%), Query Frame = 1 Query: 121 IPGTACFNRSNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKSI 579
+ GT C +E E D +GF NN +L +QFALLLAMF+KP+++PQG TQSGGAVYRR+V+RN+ CT+ I Y +TTV+VVL +++T AP +AA L + P+ NI VTLCLTEI+LPLGF+SC+K+I
Sbjct: 169 LEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTT-------------------APGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAI 302
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D7G2C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C9_ECTSI) HSP 1 Score: 113 bits (283), Expect = 9.400e-28 Identity = 70/161 (43.48%), Postives = 90/161 (55.90%), Query Frame = 1 Query: 112 GVDIPGTACFNR--SNEETETGEVGDMIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKSINTG 588
G D GT C+N +E + F NN LL VQF LLL +F++PMLV QSGGAVYRRVV+RN+ CT GI +Y ITT+VVV+A + ++NK +A + + + N TLCLTEI LPLGF SCMK+ +TG
Sbjct: 35 GTDPAGTFCYNGIVPTGASELTTSNNAQSFGINNVLLVVQFILLLGLFVQPMLVRVEGAQSGGAVYRRVVLRNVFCTAGIVISYAITTLVVVIALLRESVESNK-------------------SAQIRDVALAANSLGTLCLTEITLPLGFRSCMKACSTG 176
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE) HSP 1 Score: 114 bits (285), Expect = 9.490e-27 Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = 1 Query: 130 TACFNRSNEETETGEVGD-MIGFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKS 576
T C N + + +T EV D ++G+ SN L +QF LLL +F++P+LV +QSG A+YR VVI+NI CT+ + AY +TTVVV+ A + +D+N A++ ITP +N VTLCLTEIALPLGF+SC K+
Sbjct: 192 TFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNT-------------------ASLFADITPLVNQFVTLCLTEIALPLGFSSCWKA 322
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D7G4H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H2_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.940e-18 Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 1 Query: 187 IGF-ASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKMCGLFITGPLLNRAPLMSQAAVLGHITPSINICVTLCLTEIALPLGFTSCMKSINTGRHSG 600
+GF +NN +L +Q LLLAMF+K +++ QGSTQSG AVYRR+V R+IVCTV + Y TT VVVLA ++ N +IALP GF+SC+KSI GR++G
Sbjct: 1 MGFMTNNNMMLVIQLTLLLAMFVKLIMISQGSTQSGRAVYRRLVARSIVCTVAVVLGYTTTTAVVVLAVLAAFPGNN----------------------------------------QIALPFGFSSCLKSIKAGRNAG 99
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.010e-15 Identity = 45/104 (43.27%), Postives = 66/104 (63.46%), Query Frame = 1 Query: 112 GVDIPGTACFNRSNEETETGEVGDMI-GFASNNALLTVQFALLLAMFIKPMLVPQGSTQSGGAVYRRVVIRNIVCTVGIACAYVITTVVVVLAYVSTPSDTNKM 420
G + T C N N + + EV + I G+ SN L +QF LLL +F++P+LV +QSG A+YRRVVI+NI CT+ + AY +TTVVV+ A + +D+N +
Sbjct: 183 GTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNNDSNTI 286 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1057.409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1057.409.1 >prot_E-siliculosus-1a_F_contig1057.409.1 ID=prot_E-siliculosus-1a_F_contig1057.409.1|Name=mRNA_E-siliculosus-1a_F_contig1057.409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=200bp LRPGVPGAVSRRKDKRYERQPNSHLLGKGHHLVVSLLGVDIPGTACFNRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1057:4262..6979+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1057.409.1 ID=mRNA_E-siliculosus-1a_F_contig1057.409.1|Name=mRNA_E-siliculosus-1a_F_contig1057.409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2718bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1057:4262..6979+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1057:4262..6979+ >mRNA_E-siliculosus-1a_F_contig1057.409.1 ID=mRNA_E-siliculosus-1a_F_contig1057.409.1|Name=mRNA_E-siliculosus-1a_F_contig1057.409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1200bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1057:4262..6979+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |