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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LU11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU11_ECTSI) HSP 1 Score: 132 bits (333), Expect = 6.560e-37 Identity = 69/92 (75.00%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 170 PRLATICHVPLASAQFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPL 445
P ICH PLAS QFWEQ +AVVAG PF IPLGMLEYDHARIASDEVTPKRDTIAEH R RR NFA S H VSMQNRGLLRYPL
Sbjct: 57 PPTCYICHPPLASVQFWEQPMAVVAGWPFQIPLGMLEYDHARIASDEVTPKRDTIAEHHRDRRGNFAAFLSVPP-GEHAVSMQNRGLLRYPL 147
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 6.060e-12 Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 2 Query: 170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRR--GRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
P +CH+PL S QFW+ R+AVVAGRP + LGM EY+ R D V P R ++A HR G F + H V+MQNRGLLRYP +
Sbjct: 1464 PPTCYVCHLPLVSMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVARHRLQPGTTHRFRME--------HAVAMQNRGLLRYPFA 1561
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.390e-9 Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 2 Query: 170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
P +CH+PLAS QFW+ R+AVVAGRP + LGM EY+ R D V P R ++A+HR + + +NRGLLRYP +
Sbjct: 1297 PPTCYVCHLPLASMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVAKHR----------------LQTGTTHRNRGLLRYPFT 1384
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 450 |
| Model size | 451 |
| Exons | 3 |
| Ec32 ortholog | Ec-21_000680.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1056.404.1 >prot_E-siliculosus-1a_F_contig1056.404.1 ID=prot_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
MQVEAEEEGKEDGAGSGAGSGGGAVAGVSDGKGVGKGGTSTWGKGERVAG
MKEWRAPPTCYNLPRPSRVRAILGAALGRGGGEALLDPARHARVRPRQDR
LGRGHPKEGHDRRAPPRQAGQFRREFFRLPDSISRGLHAEPRASALPTLC back to topmRNA from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1069bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTGCGGGCAGCGG
TGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGATGGGAAGGGTG
TGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAGGGTGGCGGGG
ATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGCCACGTCCCTC
TCGCGTCCGCGTGCGAGTGCACCGCCGGCTCGCTGGAAGCGGAGAGGTGG
GTTTTGATTATGTTGTTACTGTTGTTGTTGTTATTCTTGTTCTTGTTGGA
CAGTGTGTTGACGTTGTTTGATGCTGGCGTGTTGCTCCTGTTGTTGCTTG
CCGGCTCATGCATCGCCGCTCGCGTCCATGCTTGTCTGTGGTGTCGCGGC
CTTGCTTTCTTTTCTGAGTCGTTTTTTTTTTCGTTTCGTGTCGCTTCGGC
CCGTAGTAAGAATATGCAGGCAATTCTGGGAGCAGCGCTTGGCCGTGGTG
GCGGGGAGGCCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACGC
CAGGATCGCCTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAGC
ACCGCCGCGGCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCGG
ATAGTATATGTGTACCATTTGGGTACCTGGTCATCGTGTTATTTTGTGGT
GCACCCGGTCTTGTGTCTGCTCAACTCGGTCAAGCCCAGGCTGCTCGCCT
CAGCGTTTGTGAATTTTCACTCAGCAGGCCTCATTTATGTGCTTGGTTGG
AGCCTCGCGTGCTTGTTCCCTCTTCCAGCAAGAAGGGCGTAGCGCTCCCG
CGTATCGCCAACGCGGCGAGCTGAGGCTGTTTCAAGATCACCCTAACCGC
CGTTTGAATGCCCCATTTATTCTTCGCTATCTTTGACCTTACCGTGGAAC
CCATTCTGTGTTTCCGCCGCCGCCGCCACCGCCGCCGCCGAACGCCTTGC
CTCTCAGTTCCGCCTGGAGCACGTGGTCTCCATGCAGAACCGCGGGCTTC
TGCGTTACCCACTCTCTGT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ >mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTGCGGGCAGCGG
TGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGATGGGAAGGGTG
TGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAGGGTGGCGGGG
ATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGCCACGTCCCTC
TCGCGTCCGCATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTG
CGGGCAGCGGTGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGAT
GGGAAGGGTGTGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAG
GGTGGCGGGGATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGC
CACGTCCCTCTCGCGTCCGCGCAATTCTGGGAGCAGCGCTTGGCCGTGGT
GGCGGGGAGGCCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACG
CCAGGATCGCCTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAG
CACCGCCGCGGCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCG
GATAGTATATGCAATTCTGGGAGCAGCGCTTGGCCGTGGTGGCGGGGAGG
CCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACGCCAGGATCGC
CTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAGCACCGCCGCG
GCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCGGATAGTATAT
CACGTGGTCTCCATGCAGAACCGCGGGCTTCTGCGTTACCCACTCTCTGT
CACGTGGTCTCCATGCAGAACCGCGGGCTTCTGCGTTACCCACTCTCTGT back to top
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