mRNA_E-siliculosus-1a_F_contig1056.404.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LU11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU11_ECTSI) HSP 1 Score: 132 bits (333), Expect = 6.560e-37 Identity = 69/92 (75.00%), Postives = 70/92 (76.09%), Query Frame = 2 Query: 170 PRLATICHVPLASAQFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPL 445
P ICH PLAS QFWEQ +AVVAG PF IPLGMLEYDHARIASDEVTPKRDTIAEH R RR NFA S H VSMQNRGLLRYPL
Sbjct: 57 PPTCYICHPPLASVQFWEQPMAVVAGWPFQIPLGMLEYDHARIASDEVTPKRDTIAEHHRDRRGNFAAFLSVPP-GEHAVSMQNRGLLRYPL 147
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 6.060e-12 Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 2 Query: 170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRR--GRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
P +CH+PL S QFW+ R+AVVAGRP + LGM EY+ R D V P R ++A HR G F + H V+MQNRGLLRYP +
Sbjct: 1464 PPTCYVCHLPLVSMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVARHRLQPGTTHRFRME--------HAVAMQNRGLLRYPFA 1561
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 5.390e-9 Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 2 Query: 170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
P +CH+PLAS QFW+ R+AVVAGRP + LGM EY+ R D V P R ++A+HR + + +NRGLLRYP +
Sbjct: 1297 PPTCYVCHLPLASMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVAKHR----------------LQTGTTHRNRGLLRYPFT 1384 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1056.404.1 >prot_E-siliculosus-1a_F_contig1056.404.1 ID=prot_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp MQVEAEEEGKEDGAGSGAGSGGGAVAGVSDGKGVGKGGTSTWGKGERVAGback to top mRNA from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1069bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ >mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |