mRNA_E-siliculosus-1a_F_contig1056.404.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1056.404.1
Unique NamemRNA_E-siliculosus-1a_F_contig1056.404.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LU11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU11_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 6.560e-37
Identity = 69/92 (75.00%), Postives = 70/92 (76.09%), Query Frame = 2 
Query:  170 PRLATICHVPLASAQFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPL 445
            P    ICH PLAS QFWEQ +AVVAG PF IPLGMLEYDHARIASDEVTPKRDTIAEH R RR NFA   S      H VSMQNRGLLRYPL
Sbjct:   57 PPTCYICHPPLASVQFWEQPMAVVAGWPFQIPLGMLEYDHARIASDEVTPKRDTIAEHHRDRRGNFAAFLSVPP-GEHAVSMQNRGLLRYPL 147
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BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.060e-12
Identity = 44/107 (41.12%), Postives = 55/107 (51.40%), Query Frame = 2 
Query:  170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRR--GRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
            P    +CH+PL S             QFW+ R+AVVAGRP  + LGM EY+  R   D V P R ++A HR   G    F +         H V+MQNRGLLRYP +
Sbjct: 1464 PPTCYVCHLPLVSMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVARHRLQPGTTHRFRME--------HAVAMQNRGLLRYPFA 1561
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BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.390e-9
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 2 
Query:  170 PRLATICHVPLASA------------QFWEQRLAVVAGRPF*IPLGMLEYDHARIASDEVTPKRDTIAEHRRGRRANFAVSFSASRIVYHVVSMQNRGLLRYPLS 448
            P    +CH+PLAS             QFW+ R+AVVAGRP  + LGM EY+  R   D V P R ++A+HR                +    + +NRGLLRYP +
Sbjct: 1297 PPTCYVCHLPLASMCECTAGSLDVERQFWDHRVAVVAGRPLKVDLGMQEYNEDRFFGD-VVPTRGSVAKHR----------------LQTGTTHRNRGLLRYPFT 1384
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1056.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU11_ECTSI6.560e-3775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCP6_ECTSI6.060e-1241.12Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JGJ4_9PHAE5.390e-937.14Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1056contigE-siliculosus-1a_F_contig1056:22394..23462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size450
Model size451
Exons3
Ec32 orthologEc-21_000680.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1056.404.1prot_E-siliculosus-1a_F_contig1056.404.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1056 22394..23462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.5145767-CDS-E-siliculosus-1a_F_contig1056:22393..226031622927557.5145767-CDS-E-siliculosus-1a_F_contig1056:22393..22603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 22394..22603 +
1696318584.871376-CDS-E-siliculosus-1a_F_contig1056:22393..226031696318584.871376-CDS-E-siliculosus-1a_F_contig1056:22393..22603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 22394..22603 +
1622927557.532074-CDS-E-siliculosus-1a_F_contig1056:22862..230521622927557.532074-CDS-E-siliculosus-1a_F_contig1056:22862..23052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 22863..23052 +
1696318584.881529-CDS-E-siliculosus-1a_F_contig1056:22862..230521696318584.881529-CDS-E-siliculosus-1a_F_contig1056:22862..23052Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 22863..23052 +
1622927557.5469506-CDS-E-siliculosus-1a_F_contig1056:23412..234621622927557.5469506-CDS-E-siliculosus-1a_F_contig1056:23412..23462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 23413..23462 +
1696318584.9044013-CDS-E-siliculosus-1a_F_contig1056:23412..234621696318584.9044013-CDS-E-siliculosus-1a_F_contig1056:23412..23462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 23413..23462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1056.404.1

>prot_E-siliculosus-1a_F_contig1056.404.1 ID=prot_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
MQVEAEEEGKEDGAGSGAGSGGGAVAGVSDGKGVGKGGTSTWGKGERVAG
MKEWRAPPTCYNLPRPSRVRAILGAALGRGGGEALLDPARHARVRPRQDR
LGRGHPKEGHDRRAPPRQAGQFRREFFRLPDSISRGLHAEPRASALPTLC
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mRNA from alignment at E-siliculosus-1a_F_contig1056:22394..23462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1069bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTGCGGGCAGCGG
TGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGATGGGAAGGGTG
TGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAGGGTGGCGGGG
ATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGCCACGTCCCTC
TCGCGTCCGCGTGCGAGTGCACCGCCGGCTCGCTGGAAGCGGAGAGGTGG
GTTTTGATTATGTTGTTACTGTTGTTGTTGTTATTCTTGTTCTTGTTGGA
CAGTGTGTTGACGTTGTTTGATGCTGGCGTGTTGCTCCTGTTGTTGCTTG
CCGGCTCATGCATCGCCGCTCGCGTCCATGCTTGTCTGTGGTGTCGCGGC
CTTGCTTTCTTTTCTGAGTCGTTTTTTTTTTCGTTTCGTGTCGCTTCGGC
CCGTAGTAAGAATATGCAGGCAATTCTGGGAGCAGCGCTTGGCCGTGGTG
GCGGGGAGGCCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACGC
CAGGATCGCCTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAGC
ACCGCCGCGGCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCGG
ATAGTATATGTGTACCATTTGGGTACCTGGTCATCGTGTTATTTTGTGGT
GCACCCGGTCTTGTGTCTGCTCAACTCGGTCAAGCCCAGGCTGCTCGCCT
CAGCGTTTGTGAATTTTCACTCAGCAGGCCTCATTTATGTGCTTGGTTGG
AGCCTCGCGTGCTTGTTCCCTCTTCCAGCAAGAAGGGCGTAGCGCTCCCG
CGTATCGCCAACGCGGCGAGCTGAGGCTGTTTCAAGATCACCCTAACCGC
CGTTTGAATGCCCCATTTATTCTTCGCTATCTTTGACCTTACCGTGGAAC
CCATTCTGTGTTTCCGCCGCCGCCGCCACCGCCGCCGCCGAACGCCTTGC
CTCTCAGTTCCGCCTGGAGCACGTGGTCTCCATGCAGAACCGCGGGCTTC
TGCGTTACCCACTCTCTGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1056:22394..23462+

>mRNA_E-siliculosus-1a_F_contig1056.404.1 ID=mRNA_E-siliculosus-1a_F_contig1056.404.1|Name=mRNA_E-siliculosus-1a_F_contig1056.404.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:22394..23462+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTGCGGGCAGCGG
TGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGATGGGAAGGGTG
TGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAGGGTGGCGGGG
ATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGCCACGTCCCTC
TCGCGTCCGCATGCAGGTCGAGGCGGAGGAGGAGGGCAAGGAAGATGGTG
CGGGCAGCGGTGCGGGTTCCGGCGGCGGTGCCGTTGCAGGTGTCTCCGAT
GGGAAGGGTGTGGGGAAGGGCGGCACCAGCACCTGGGGAAAGGGCGAGAG
GGTGGCGGGGATGAAGGAGTGGAGGGCGCCCCCGACTTGCTACAATCTGC
CACGTCCCTCTCGCGTCCGCGCAATTCTGGGAGCAGCGCTTGGCCGTGGT
GGCGGGGAGGCCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACG
CCAGGATCGCCTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAG
CACCGCCGCGGCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCG
GATAGTATATGCAATTCTGGGAGCAGCGCTTGGCCGTGGTGGCGGGGAGG
CCCTTCTAGATCCCGCTCGGCATGCTCGAGTACGACCACGCCAGGATCGC
CTCGGACGAGGTCACCCCAAAGAGGGACACGATCGCCGAGCACCGCCGCG
GCAGGCGGGCCAATTTCGCCGTGAGTTTTTCCGCCTCCCGGATAGTATAT
CACGTGGTCTCCATGCAGAACCGCGGGCTTCTGCGTTACCCACTCTCTGT
CACGTGGTCTCCATGCAGAACCGCGGGCTTCTGCGTTACCCACTCTCTGT
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