mRNA_E-siliculosus-1a_F_contig10559.402.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 1.620e-151
Identity = 235/271 (86.72%), Postives = 239/271 (88.19%), Query Frame = 1

Query:    1 RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFE 813
            +VAKYLLETCNVDAGTADSVGYTPLAI+AQGGHVSIVRMLLKRGVA LGKNAYRDAITGVAMTGNMEMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNG TPLDVVDTKRSPQ                GPAYRALSW WPAS A ETTPDSAAATGGAALAL G DAAEPGSAK+AAQLVPYPETEKEWVDSDESFDEAFASA+AGSWRLN  VAVFRRSRPPPP CGSEGG   VEQRAALVS FE
Sbjct:  194 KVAKYLLETCNVDAGTADSVGYTPLAISAQGGHVSIVRMLLKRGVALLGKNAYRDAITGVAMTGNMEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGGTPLDVVDTKRSPQ----------------GPAYRALSWRWPASSAFETTPDSAAATGGAALALPGLDAAEPGSAKDAAQLVPYPETEKEWVDSDESFDEAFASAVAGSWRLN--VAVFRRSRPPPPPCGSEGGYPAVEQRAALVSRFE 446

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BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: A0A6H5K5E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E4_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 9.430e-137
Identity = 207/234 (88.46%), Postives = 210/234 (89.74%), Query Frame = 1

Query:  115 MLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFER 816
            MLLKRGVAFLG NAYRDAITGVAMTGN+EMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPL+VVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSW WPASPA ETTPDSAAA GGAALAL G DAAEPGSAKNAAQL+PYPETEKEWVD DESFDEAFASAMAGSWRLNLNVAVFRRSRP              EQRAALVS FER
Sbjct:    1 MLLKRGVAFLGTNAYRDAITGVAMTGNIEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLNVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPAFETTPDSAAAMGGAALALPGLDAAEPGSAKNAAQLIPYPETEKEWVDRDESFDEAFASAMAGSWRLNLNVAVFRRSRPXXXXXXXXXXXXXAEQRAALVSRFER 234

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G159_ECTSI	1.620e-151	86.72	Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si...	[more]
A0A6H5K5E4_9PHAE	9.430e-137	88.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Properties


Property Name	Value
Start	0
Stop	0
Cds size	825
Model size	825
Exons	2
Ec32 ortholog	Ec-08_005370.1
Ec32 ortholog description	Ankyrin repeat-containing domain
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	G
EggNOG OGs	COG0666@1,KOG4177@2759
EggNOG free text desc.	response to abiotic stimulus
Seed eggNOG ortholog	2880.D7G159
Seed ortholog evalue	1.8e-121
Seed ortholog score	442.2
Taxonomic scope	Eukaryota

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10559:50..1278-
coding sequence from alignment at E-siliculosus-1a_F_contig10559:50..1278-

protein sequence of mRNA_E-siliculosus-1a_F_contig10559.402.1

>prot_E-siliculosus-1a_F_contig10559.402.1 ID=prot_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp
RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGK
NAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYC
HARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRML
LQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNA
AQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPT
CGSEGGSSPVEQRAALVSCFERCVR

mRNA from alignment at E-siliculosus-1a_F_contig10559:50..1278-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1229bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCCAAGTACCTGCTAGAGACTTGCAACGTGGACGCAGGGACGGC
GGACAGCGTAGGCTACACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACG
TGTCCATCGTGCGGATGCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGCGTTGCGATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTACGTCGAGGAAGGGGTGAGTTGTTTTGCAT
GATCGGGATCTCGCCTGGGCGGGAGAAACGGGTGGCGTGGTCAGTGAGTG
TTTTTTGAAGGTGTTACCGTGAGTAGGTTTGTTGGCGGCTGTATTGTCTA
GTGGTGTTGGCGCGAGACGGCTTCTTGTTTGTTTTTCTTCTCGACGGACG
ACTCCTTTGTGGGCCAACCTGACGCGTGTCTGGTTTGTTGTTCTCCCTAG
AGCGTGGAGCAAGAGAGGCCGCCAAGAAAAAGGCGCCCACTATTTATTCC
ACTCCATTTGGGATGATACAACATCCACGTTTGTGTCCGGACGGCTCTCC
CGTTTTCTAACGGAGGGAGGGTTCCCAAAAAGTGTCCCATGGAATGACCA
TGTCGCGTGTACCTCACACCACGTGTGAAATAAAATAGGTCCATCTCCGG
GGCGCGAAGACTTCGCAGCTCATGACCGCGCTCCACTTCTCGGCCGGCTA
CTGCCACGCCCGAGCCACGGCCCTGCTTCTCCACGCCGGCGCCGACGAGG
GCGCGGTGGACAGGAACGGGGACACACCCCTCGACGTGGTCGACACCAAG
CGGTCCCCCCAGGTGCGGCACGGGGTGGGCCGCCGCCGCGTGAGGCGCAT
GCTGCTGCAAGGGCCGGCGTACCGGGCCCTGTCTTGGATGTGGCCCGCCT
CCCCCGCGGTTGAGACGACTCCTGATTCCGCCGCCGCGACTGGCGGTGCT
GCTCTCGCTCTGGCGGGGCCAGATGCTGCGGAACCGGGGTCGGCGAAAAA
TGCGGCGCAATTGGTTCCCTACCCCGAGACGGAGAAGGAGTGGGTGGATA
GTGACGAGAGTTTCGACGAGGCGTTCGCGTCTGCGATGGCCGGGTCGTGG
AGGCTTAACCTTAACGTGGCGGTCTTCCGCCGAAGCCGGCCGCCCCCGCC
GACCTGTGGCAGCGAGGGCGGGTCCTCTCCGGTGGAGCAGCGTGCGGCGC
TCGTGTCGTGCTTTGAAAGGTGTGTGCGT

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10559:50..1278-

>mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCCAAGTACCTGCTAGAGACTTGCAACGTGGACGCAGGGACGGC
GGACAGCGTAGGCTACACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACG
TGTCCATCGTGCGGATGCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGCGTTGCGATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTACGTCGAGGAAGGGAGGGTGGCCAAGTACC
TGCTAGAGACTTGCAACGTGGACGCAGGGACGGCGGACAGCGTAGGCTAC
ACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACGTGTCCATCGTGCGGAT
GCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAGAACGCCTACCGCGACG
CGATCACGGGCGTTGCGATGACGGGAAACATGGAGATGCTCCGAGAGCTT
GTGTACGTCGAGGAAGGGGTCCATCTCCGGGGCGCGAAGACTTCGCAGCT
CATGACCGCGCTCCACTTCTCGGCCGGCTACTGCCACGCCCGAGCCACGG
CCCTGCTTCTCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGG
GACACACCCCTCGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCA
CGGGGTGGGCCGCCGCCGCGTGAGGCGCATGCTGCTGCAAGGGCCGGCGT
ACCGGGCCCTGTCTTGGATGTGGCCCGCCTCCCCCGCGGTTGAGACGACT
CCTGATTCCGCCGCCGCGACTGGCGGTGCTGCTCTCGCTCTGGCGGGGCC
AGATGCTGCGGAACCGGGGTCGGCGAAAAATGCGGCGCAATTGGTTCCCT
ACCCCGAGACGGAGAAGGAGTGGGTGGATAGTGACGAGAGTTTCGACGAG
GCGTTCGCGTCTGCGATGGCCGGGTCGTGGAGGCTTAACCTTAACGTGGC
GGTCTTCCGCCGAAGCCGGCCGCCCCCGCCGACCTGTGGCAGCGAGGGCG
GGTCCTCTCCGGTGGAGCAGCGTGCGGCGCTCGTGTCGTGCTTTGAAAGG
TGTGTGCGTGTCCATCTCCGGGGCGCGAAGACTTCGCAGCTCATGACCGC
GCTCCACTTCTCGGCCGGCTACTGCCACGCCCGAGCCACGGCCCTGCTTC
TCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGGGACACACCC
CTCGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCACGGGGTGGG
CCGCCGCCGCGTGAGGCGCATGCTGCTGCAAGGGCCGGCGTACCGGGCCC
TGTCTTGGATGTGGCCCGCCTCCCCCGCGGTTGAGACGACTCCTGATTCC
GCCGCCGCGACTGGCGGTGCTGCTCTCGCTCTGGCGGGGCCAGATGCTGC
GGAACCGGGGTCGGCGAAAAATGCGGCGCAATTGGTTCCCTACCCCGAGA
CGGAGAAGGAGTGGGTGGATAGTGACGAGAGTTTCGACGAGGCGTTCGCG
TCTGCGATGGCCGGGTCGTGGAGGCTTAACCTTAACGTGGCGGTCTTCCG
CCGAAGCCGGCCGCCCCCGCCGACCTGTGGCAGCGAGGGCGGGTCCTCTC
CGGTGGAGCAGCGTGCGGCGCTCGTGTCGTGCTTTGAAAGGTGTGTGCGT