mRNA_E-siliculosus-1a_F_contig10559.402.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10559.402.1
Unique NamemRNA_E-siliculosus-1a_F_contig10559.402.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 1.620e-151
Identity = 235/271 (86.72%), Postives = 239/271 (88.19%), Query Frame = 1 
Query:    1 RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFE 813
            +VAKYLLETCNVDAGTADSVGYTPLAI+AQGGHVSIVRMLLKRGVA LGKNAYRDAITGVAMTGNMEMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNG TPLDVVDTKRSPQ                GPAYRALSW WPAS A ETTPDSAAATGGAALAL G DAAEPGSAK+AAQLVPYPETEKEWVDSDESFDEAFASA+AGSWRLN  VAVFRRSRPPPP CGSEGG   VEQRAALVS FE
Sbjct:  194 KVAKYLLETCNVDAGTADSVGYTPLAISAQGGHVSIVRMLLKRGVALLGKNAYRDAITGVAMTGNMEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGGTPLDVVDTKRSPQ----------------GPAYRALSWRWPASSAFETTPDSAAATGGAALALPGLDAAEPGSAKDAAQLVPYPETEKEWVDSDESFDEAFASAVAGSWRLN--VAVFRRSRPPPPPCGSEGGYPAVEQRAALVSRFE 446
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BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Match: A0A6H5K5E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5E4_9PHAE)

HSP 1 Score: 394 bits (1012), Expect = 9.430e-137
Identity = 207/234 (88.46%), Postives = 210/234 (89.74%), Query Frame = 1 
Query:  115 MLLKRGVAFLGKNAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNAAQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPTCGSEGGSSPVEQRAALVSCFER 816
            MLLKRGVAFLG NAYRDAITGVAMTGN+EMLRELVYVE GVHL GAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPL+VVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSW WPASPA ETTPDSAAA GGAALAL G DAAEPGSAKNAAQL+PYPETEKEWVD DESFDEAFASAMAGSWRLNLNVAVFRRSRP              EQRAALVS FER
Sbjct:    1 MLLKRGVAFLGTNAYRDAITGVAMTGNIEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGDTPLNVVDTKRSPQVRHGVGRRRVRRMLLQGPAYRALSWRWPASPAFETTPDSAAAMGGAALALPGLDAAEPGSAKNAAQLIPYPETEKEWVDRDESFDEAFASAMAGSWRLNLNVAVFRRSRPXXXXXXXXXXXXXAEQRAALVSRFER 234
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10559.402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G159_ECTSI1.620e-15186.72Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K5E4_9PHAE9.430e-13788.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10559contigE-siliculosus-1a_F_contig10559:50..1278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size825
Model size825
Exons2
Ec32 orthologEc-08_005370.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7G159
Seed ortholog evalue1.8e-121
Seed ortholog score442.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.4594357-CDS-E-siliculosus-1a_F_contig10559:49..6401622927557.4594357-CDS-E-siliculosus-1a_F_contig10559:49..640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10559 50..640 -
1696318584.8458595-CDS-E-siliculosus-1a_F_contig10559:49..6401696318584.8458595-CDS-E-siliculosus-1a_F_contig10559:49..640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10559 50..640 -
1622927557.4719775-CDS-E-siliculosus-1a_F_contig10559:1044..12781622927557.4719775-CDS-E-siliculosus-1a_F_contig10559:1044..1278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10559 1045..1278 -
1696318584.8622649-CDS-E-siliculosus-1a_F_contig10559:1044..12781696318584.8622649-CDS-E-siliculosus-1a_F_contig10559:1044..1278Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10559 1045..1278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10559.402.1prot_E-siliculosus-1a_F_contig10559.402.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10559 50..1278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10559.402.1

>prot_E-siliculosus-1a_F_contig10559.402.1 ID=prot_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=275bp
RVAKYLLETCNVDAGTADSVGYTPLAIAAQGGHVSIVRMLLKRGVAFLGK
NAYRDAITGVAMTGNMEMLRELVYVEEGVHLRGAKTSQLMTALHFSAGYC
HARATALLLHAGADEGAVDRNGDTPLDVVDTKRSPQVRHGVGRRRVRRML
LQGPAYRALSWMWPASPAVETTPDSAAATGGAALALAGPDAAEPGSAKNA
AQLVPYPETEKEWVDSDESFDEAFASAMAGSWRLNLNVAVFRRSRPPPPT
CGSEGGSSPVEQRAALVSCFERCVR
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mRNA from alignment at E-siliculosus-1a_F_contig10559:50..1278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1229bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCCAAGTACCTGCTAGAGACTTGCAACGTGGACGCAGGGACGGC
GGACAGCGTAGGCTACACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACG
TGTCCATCGTGCGGATGCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGCGTTGCGATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTACGTCGAGGAAGGGGTGAGTTGTTTTGCAT
GATCGGGATCTCGCCTGGGCGGGAGAAACGGGTGGCGTGGTCAGTGAGTG
TTTTTTGAAGGTGTTACCGTGAGTAGGTTTGTTGGCGGCTGTATTGTCTA
GTGGTGTTGGCGCGAGACGGCTTCTTGTTTGTTTTTCTTCTCGACGGACG
ACTCCTTTGTGGGCCAACCTGACGCGTGTCTGGTTTGTTGTTCTCCCTAG
AGCGTGGAGCAAGAGAGGCCGCCAAGAAAAAGGCGCCCACTATTTATTCC
ACTCCATTTGGGATGATACAACATCCACGTTTGTGTCCGGACGGCTCTCC
CGTTTTCTAACGGAGGGAGGGTTCCCAAAAAGTGTCCCATGGAATGACCA
TGTCGCGTGTACCTCACACCACGTGTGAAATAAAATAGGTCCATCTCCGG
GGCGCGAAGACTTCGCAGCTCATGACCGCGCTCCACTTCTCGGCCGGCTA
CTGCCACGCCCGAGCCACGGCCCTGCTTCTCCACGCCGGCGCCGACGAGG
GCGCGGTGGACAGGAACGGGGACACACCCCTCGACGTGGTCGACACCAAG
CGGTCCCCCCAGGTGCGGCACGGGGTGGGCCGCCGCCGCGTGAGGCGCAT
GCTGCTGCAAGGGCCGGCGTACCGGGCCCTGTCTTGGATGTGGCCCGCCT
CCCCCGCGGTTGAGACGACTCCTGATTCCGCCGCCGCGACTGGCGGTGCT
GCTCTCGCTCTGGCGGGGCCAGATGCTGCGGAACCGGGGTCGGCGAAAAA
TGCGGCGCAATTGGTTCCCTACCCCGAGACGGAGAAGGAGTGGGTGGATA
GTGACGAGAGTTTCGACGAGGCGTTCGCGTCTGCGATGGCCGGGTCGTGG
AGGCTTAACCTTAACGTGGCGGTCTTCCGCCGAAGCCGGCCGCCCCCGCC
GACCTGTGGCAGCGAGGGCGGGTCCTCTCCGGTGGAGCAGCGTGCGGCGC
TCGTGTCGTGCTTTGAAAGGTGTGTGCGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10559:50..1278-

>mRNA_E-siliculosus-1a_F_contig10559.402.1 ID=mRNA_E-siliculosus-1a_F_contig10559.402.1|Name=mRNA_E-siliculosus-1a_F_contig10559.402.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10559:50..1278- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGGCCAAGTACCTGCTAGAGACTTGCAACGTGGACGCAGGGACGGC
GGACAGCGTAGGCTACACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACG
TGTCCATCGTGCGGATGCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAG
AACGCCTACCGCGACGCGATCACGGGCGTTGCGATGACGGGAAACATGGA
GATGCTCCGAGAGCTTGTGTACGTCGAGGAAGGGAGGGTGGCCAAGTACC
TGCTAGAGACTTGCAACGTGGACGCAGGGACGGCGGACAGCGTAGGCTAC
ACGCCGCTGGCGATAGCTGCCCAGGGCGGGCACGTGTCCATCGTGCGGAT
GCTGCTCAAACGGGGCGTGGCCTTCCTGGGGAAGAACGCCTACCGCGACG
CGATCACGGGCGTTGCGATGACGGGAAACATGGAGATGCTCCGAGAGCTT
GTGTACGTCGAGGAAGGGGTCCATCTCCGGGGCGCGAAGACTTCGCAGCT
CATGACCGCGCTCCACTTCTCGGCCGGCTACTGCCACGCCCGAGCCACGG
CCCTGCTTCTCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGG
GACACACCCCTCGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCA
CGGGGTGGGCCGCCGCCGCGTGAGGCGCATGCTGCTGCAAGGGCCGGCGT
ACCGGGCCCTGTCTTGGATGTGGCCCGCCTCCCCCGCGGTTGAGACGACT
CCTGATTCCGCCGCCGCGACTGGCGGTGCTGCTCTCGCTCTGGCGGGGCC
AGATGCTGCGGAACCGGGGTCGGCGAAAAATGCGGCGCAATTGGTTCCCT
ACCCCGAGACGGAGAAGGAGTGGGTGGATAGTGACGAGAGTTTCGACGAG
GCGTTCGCGTCTGCGATGGCCGGGTCGTGGAGGCTTAACCTTAACGTGGC
GGTCTTCCGCCGAAGCCGGCCGCCCCCGCCGACCTGTGGCAGCGAGGGCG
GGTCCTCTCCGGTGGAGCAGCGTGCGGCGCTCGTGTCGTGCTTTGAAAGG
TGTGTGCGTGTCCATCTCCGGGGCGCGAAGACTTCGCAGCTCATGACCGC
GCTCCACTTCTCGGCCGGCTACTGCCACGCCCGAGCCACGGCCCTGCTTC
TCCACGCCGGCGCCGACGAGGGCGCGGTGGACAGGAACGGGGACACACCC
CTCGACGTGGTCGACACCAAGCGGTCCCCCCAGGTGCGGCACGGGGTGGG
CCGCCGCCGCGTGAGGCGCATGCTGCTGCAAGGGCCGGCGTACCGGGCCC
TGTCTTGGATGTGGCCCGCCTCCCCCGCGGTTGAGACGACTCCTGATTCC
GCCGCCGCGACTGGCGGTGCTGCTCTCGCTCTGGCGGGGCCAGATGCTGC
GGAACCGGGGTCGGCGAAAAATGCGGCGCAATTGGTTCCCTACCCCGAGA
CGGAGAAGGAGTGGGTGGATAGTGACGAGAGTTTCGACGAGGCGTTCGCG
TCTGCGATGGCCGGGTCGTGGAGGCTTAACCTTAACGTGGCGGTCTTCCG
CCGAAGCCGGCCGCCCCCGCCGACCTGTGGCAGCGAGGGCGGGTCCTCTC
CGGTGGAGCAGCGTGCGGCGCTCGTGTCGTGCTTTGAAAGGTGTGTGCGT
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