mRNA_E-siliculosus-1a_F_contig10.39.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.39.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI) HSP 1 Score: 1716 bits (4445), Expect = 0.000e+0 Identity = 907/1060 (85.57%), Postives = 933/1060 (88.02%), Query Frame = 1
Query: 1 ALEMFEDAEGYFSRLPGSFYGKCSGGNGQPAGWQKSDMPSLSAEDLILAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGLSVSTAVHAASVGEERFKKGDCRGASRILRLALQAVGGYVGSGPAATASDPQAAHTGRLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGRWCAKGGGTDPPPKLLFAKCKVLTDAGDLTGAYTAAKTLVALTPAPSGTPTAGVGDREPEDGLDLAAARLISSREDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWLSPDGQHEKSSAAAATADKEAVDRAEKTADDMIAEISGCNSVATSQVDSALEVLVTFTEFFQGREKWESCARWCGRAINLAKGDSKGSTPKRAPHPDKAALLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLAACVGLVAGVRKATQDPDQRGGSDAGDARYDSRVTMVQERLLEALLLEAPATINVTKEVGPTQAQPSTSXXXXXXXXXXXXXXXXXXXXXXXXXCGGLAPTPMVVEGEGDEDEGDASVAGTGADATPSGNRSAGSNGNGTDAVPTAVQVVASIVDSALQWTSKQELQINRDSAEDAVSVLSRVLLSVDKTLRCAGSLGIGPLDDPDIQYLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVDKVTHTESKRTDLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLANVTMGSSERRDMLERSRKEVEVATGLNRLLSDVKPEMATEMRSILLVAEMSVLGRLGDSVAVRSLVASREPDFLRCSTNLLRYCLQLAEDMLDDAKSTAGLCRLCIRRCVEEDPVDTCALGGFYRRLLVSAPSREEALLVVDEFTAKSRDLQEGPGMPSDDVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDAETATNPIMAGGSGLQASTAIGGRAFLSTGLFPMP 3180
ALEMFEDAEGYFSRLPGSFY GWQK MPSLSAEDLI+AVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGL +STAVHAASVGEERFKKGDCRGASRILRLALQA+GG VGSGP ATASDPQAAHTG+LRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGG WCAKGGGTDPPPK LFAKCKVLTDAGDLTGAYTAAK LVALTPAPSG PTAGVGD EPEDGLDLAAARLISSR+DCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGW SPDGQHEK SAAAATA+ EAV RAEKTADDMIAEISGCN+VAT QVDSALEVLVTFTEFFQGR+KWESCARWCGRAINLA GDSKGSTPKR PH DKA+LLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLA CVGLVAGVRKATQDPDQRG SDAG+ARYDSRVTMVQERLLEALL+EAPAT ++ KE PTQAQPSTS CGG+APTPMVVEGEGDED GD VA TGADATP GNRSAGSNGNGTD VPTAVQVVAS+VDSALQW SK+E++++R SAEDA SVLSRVLLSVDKTLR AGSLGIGPLDDPDI+YLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVD+ THTE KR DLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLAN T SSERRDMLERSRKEVEVATGLNRLLSDVKP+MATEMRSILLVAEMSVLGRLGD VAVRSLVASREPDFLRCSTNLL+YCLQ +EALLVVDEFTAKSRDLQEGPGMPS+DVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDA TATNPIMAGGSG QASTAIGGRAFLSTGLFPMP
Sbjct: 83 ALEMFEDAEGYFSRLPGSFYA---------TGWQKFGMPSLSAEDLIMAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGLRMSTAVHAASVGEERFKKGDCRGASRILRLALQAIGGDVGSGPTATASDPQAAHTGKLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGGWCAKGGGTDPPPKFLFAKCKVLTDAGDLTGAYTAAKALVALTPAPSGKPTAGVGDGEPEDGLDLAAARLISSRDDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWWSPDGQHEKGSAAAATAENEAVGRAEKTADDMIAEISGCNNVATYQVDSALEVLVTFTEFFQGRDKWESCARWCGRAINLATGDSKGSTPKRVPHADKASLLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLATCVGLVAGVRKATQDPDQRGESDAGNARYDSRVTMVQERLLEALLVEAPATTDMEKEAEPTQAQPSTSSTPHEAGSDKDGPAGSAPVGGAGEDCGGIAPTPMVVEGEGDEDVGDVPVARTGADATPPGNRSAGSNGNGTDPVPTAVQVVASMVDSALQWVSKEEIKVHRGSAEDAASVLSRVLLSVDKTLRRAGSLGIGPLDDPDIRYLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVDEATHTERKRNDLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLANATTSSSERRDMLERSRKEVEVATGLNRLLSDVKPDMATEMRSILLVAEMSVLGRLGDFVAVRSLVASREPDFLRCSTNLLQYCLQ------------------------------------------------DEALLVVDEFTAKSRDLQEGPGMPSEDVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDAATATNPIMAGGSGSQASTAIGGRAFLSTGLFPMP 1085 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.39.1 >prot_E-siliculosus-1a_F_contig10.39.1 ID=prot_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1058bp MFEDAEGYFSRLPGSFYGKCSGGNGQPAGWQKSDMPSLSAEDLILAVHKAback to top mRNA from alignment at E-siliculosus-1a_F_contig10:53130..63632+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.39.1 ID=mRNA_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10503bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:53130..63632+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:53130..63632+ >mRNA_E-siliculosus-1a_F_contig10.39.1 ID=mRNA_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:53130..63632+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |