mRNA_E-siliculosus-1a_F_contig10.39.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.39.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI) HSP 1 Score: 1716 bits (4445), Expect = 0.000e+0 Identity = 907/1060 (85.57%), Postives = 933/1060 (88.02%), Query Frame = 1 Query: 1 ALEMFEDAEGYFSRLPGSFYGKCSGGNGQPAGWQKSDMPSLSAEDLILAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGLSVSTAVHAASVGEERFKKGDCRGASRILRLALQAVGGYVGSGPAATASDPQAAHTGRLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGRWCAKGGGTDPPPKLLFAKCKVLTDAGDLTGAYTAAKTLVALTPAPSGTPTAGVGDREPEDGLDLAAARLISSREDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWLSPDGQHEKSSAAAATADKEAVDRAEKTADDMIAEISGCNSVATSQVDSALEVLVTFTEFFQGREKWESCARWCGRAINLAKGDSKGSTPKRAPHPDKAALLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLAACVGLVAGVRKATQDPDQRGGSDAGDARYDSRVTMVQERLLEALLLEAPATINVTKEVGPTQAQPSTSXXXXXXXXXXXXXXXXXXXXXXXXXCGGLAPTPMVVEGEGDEDEGDASVAGTGADATPSGNRSAGSNGNGTDAVPTAVQVVASIVDSALQWTSKQELQINRDSAEDAVSVLSRVLLSVDKTLRCAGSLGIGPLDDPDIQYLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVDKVTHTESKRTDLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLANVTMGSSERRDMLERSRKEVEVATGLNRLLSDVKPEMATEMRSILLVAEMSVLGRLGDSVAVRSLVASREPDFLRCSTNLLRYCLQLAEDMLDDAKSTAGLCRLCIRRCVEEDPVDTCALGGFYRRLLVSAPSREEALLVVDEFTAKSRDLQEGPGMPSDDVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDAETATNPIMAGGSGLQASTAIGGRAFLSTGLFPMP 3180
ALEMFEDAEGYFSRLPGSFY GWQK MPSLSAEDLI+AVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGL +STAVHAASVGEERFKKGDCRGASRILRLALQA+GG VGSGP ATASDPQAAHTG+LRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGG WCAKGGGTDPPPK LFAKCKVLTDAGDLTGAYTAAK LVALTPAPSG PTAGVGD EPEDGLDLAAARLISSR+DCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGW SPDGQHEK SAAAATA+ EAV RAEKTADDMIAEISGCN+VAT QVDSALEVLVTFTEFFQGR+KWESCARWCGRAINLA GDSKGSTPKR PH DKA+LLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLA CVGLVAGVRKATQDPDQRG SDAG+ARYDSRVTMVQERLLEALL+EAPAT ++ KE PTQAQPSTS CGG+APTPMVVEGEGDED GD VA TGADATP GNRSAGSNGNGTD VPTAVQVVAS+VDSALQW SK+E++++R SAEDA SVLSRVLLSVDKTLR AGSLGIGPLDDPDI+YLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVD+ THTE KR DLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLAN T SSERRDMLERSRKEVEVATGLNRLLSDVKP+MATEMRSILLVAEMSVLGRLGD VAVRSLVASREPDFLRCSTNLL+YCLQ +EALLVVDEFTAKSRDLQEGPGMPS+DVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDA TATNPIMAGGSG QASTAIGGRAFLSTGLFPMP
Sbjct: 83 ALEMFEDAEGYFSRLPGSFYA---------TGWQKFGMPSLSAEDLIMAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGLRMSTAVHAASVGEERFKKGDCRGASRILRLALQAIGGDVGSGPTATASDPQAAHTGKLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGGWCAKGGGTDPPPKFLFAKCKVLTDAGDLTGAYTAAKALVALTPAPSGKPTAGVGDGEPEDGLDLAAARLISSRDDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWWSPDGQHEKGSAAAATAENEAVGRAEKTADDMIAEISGCNNVATYQVDSALEVLVTFTEFFQGRDKWESCARWCGRAINLATGDSKGSTPKRVPHADKASLLLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLATCVGLVAGVRKATQDPDQRGESDAGNARYDSRVTMVQERLLEALLVEAPATTDMEKEAEPTQAQPSTSSTPHEAGSDKDGPAGSAPVGGAGEDCGGIAPTPMVVEGEGDEDVGDVPVARTGADATPPGNRSAGSNGNGTDPVPTAVQVVASMVDSALQWVSKEEIKVHRGSAEDAASVLSRVLLSVDKTLRRAGSLGIGPLDDPDIRYLSHGCWNLAVRCCGSNCDLPWGDKVGSSASKDQMSVDEATHTERKRNDLLVLAPAFFKASRNWAEIGSDANMEDALLRRQNCVVLSIAATLELYDSKPVDGAPLANATTSSSERRDMLERSRKEVEVATGLNRLLSDVKPDMATEMRSILLVAEMSVLGRLGDFVAVRSLVASREPDFLRCSTNLLQYCLQ------------------------------------------------DEALLVVDEFTAKSRDLQEGPGMPSEDVDYVSAKCYNLGLQLLEMSRPGEAERFVGKALGLLKLGSSPAFVRRWEEAIHKVYRTTLQAKGDAATATNPIMAGGSGSQASTAIGGRAFLSTGLFPMP 1085 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.39.1 >prot_E-siliculosus-1a_F_contig10.39.1 ID=prot_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1058bp MFEDAEGYFSRLPGSFYGKCSGGNGQPAGWQKSDMPSLSAEDLILAVHKAback to top mRNA from alignment at E-siliculosus-1a_F_contig10:53130..63632+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.39.1 ID=mRNA_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10503bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:53130..63632+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:53130..63632+ >mRNA_E-siliculosus-1a_F_contig10.39.1 ID=mRNA_E-siliculosus-1a_F_contig10.39.1|Name=mRNA_E-siliculosus-1a_F_contig10.39.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6348bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:53130..63632+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |