mRNA_E-siliculosus-1a_F_contig1055.400.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1055.400.1
Unique NamemRNA_E-siliculosus-1a_F_contig1055.400.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: D8LRM3_ECTSI (FkbM n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM3_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 4.340e-87
Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 
Query:    1 QEVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEEFYFYRDNPGESTRHRGERGEQRQALDADVDAASWRRVVEERKHPDRARGARY 435
            +EVFVRR YFQHGIRVEEGAVVVDAGANIGLFSLQC REAKGVQV AFEPIPVIYDVLVRNLFNA+SG VKEGTCPKPVALRVALGAEQAEEEFYF+RDNPGESTRHRGERGEQ+QAL+ADVDAASWRRVVEE KHPDRARGARY
Sbjct:   29 EEVFVRRCYFQHGIRVEEGAVVVDAGANIGLFSLQCLREAKGVQVFAFEPIPVIYDVLVRNLFNASSGPVKEGTCPKPVALRVALGAEQAEEEFYFFRDNPGESTRHRGERGEQQQALEADVDAASWRRVVEEGKHPDRARGARY 173
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A101SVT2_9ACTN (Methyltransf_21 domain-containing protein n=1 Tax=Streptomyces bungoensis TaxID=285568 RepID=A0A101SVT2_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 4.050e-16
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+FV R+Y +HGIR+ + A +VDAGAN+GLFSL   RE  G  ++AFEPIP I+  L+ NL +  +  V+         +R ALG +  E   F FY   PG STR+
Sbjct:   34 EIFVERAYLKHGIRLSDSARIVDAGANVGLFSLFVKREFPGASILAFEPIPTIHQALLENLDSHGAKDVE--------VVRAALGRQPEERVRFTFYPALPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A370ASV3_9ACTN (FkbM family methyltransferase n=1 Tax=Streptomyces corynorhini TaxID=2282652 RepID=A0A370ASV3_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 3.970e-15
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+FV R+Y +HGI++ + + +VDAGAN+GLFSL   +E  G +++AFEPIP I+  L  NL +  +  V+         +R ALG++  E+  F FY   PG STR+
Sbjct:   34 EIFVERTYLKHGIQLSDSSRIVDAGANVGLFSLFMKQEFPGARILAFEPIPAIHQALTENLDSHGAKDVE--------VVRSALGSQYEEQVRFTFYPSLPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A0N1NKX6_9ACTN (Methyltransferase FkbM family n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A0N1NKX6_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-14
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+FV R+Y +HGI++ + + +VDAGAN+GLFSL   +E  G +++AFEPIP I+  L+ NL +  +  V+         +R ALG    ++  F FY   PG STR+
Sbjct:   34 EIFVERAYLKHGIQLSDSSRIVDAGANVGLFSLFVKQEFPGARILAFEPIPAIHQALLENLDSRGAKDVE--------VVRSALGGRHEDQVRFTFYPALPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI0006E3758B (FkbM family methyltransferase n=1 Tax=Streptomyces graminilatus TaxID=1464070 RepID=UPI0006E3758B)

HSP 1 Score: 83.2 bits (204), Expect = 1.700e-14
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+FV R+Y +HGI++ + + VVDAGAN+GLFSL   +E  G +++AFEPIP I+  L+ NL +  +  V+          R ALG +  +E  F FY   PG STR+
Sbjct:   34 EIFVERAYLKHGIQLSDSSRVVDAGANVGLFSLFVKQEFPGAKILAFEPIPAIHRALLENLDSHGAKDVE--------VHRSALGRQHEDEVRFTFYPSLPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A1A9C7P2_9ACTN (Methyltransferase, FkbM family n=1 Tax=Streptomyces sp. DI166 TaxID=1839783 RepID=A0A1A9C7P2_9ACTN)

HSP 1 Score: 82.4 bits (202), Expect = 3.160e-14
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+F  R+Y +HGI++ + + VVDAGAN+GLFSL   +E  G +++AFEPIP I+  LV NL +  +  V+         +R ALG +  E+  F FY   PG STR+
Sbjct:   34 EIFGERAYLKHGIQLSDSSRVVDAGANVGLFSLFVKQEFPGARILAFEPIPAIHRALVENLDSHGAKDVE--------VVRAALGRKAEEQVRFTFYPALPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI00196289BA (FkbM family methyltransferase n=1 Tax=Streptomyces actuosus TaxID=1885 RepID=UPI00196289BA)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-13
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEE--FYFYRDNPGESTRH 321
            E+FV R+Y +HGI++   A VVDAGAN+GLFSL   +E    +++AFEPIP I+  L+ NL    +  V+         +R ALG  QAEE   F FY   PG STR+
Sbjct:   34 EIFVERAYLRHGIQLSGSARVVDAGANVGLFSLFVKQEFPDARILAFEPIPAIHRALLENLDGHGAKDVE--------VVRAALGR-QAEERVRFTFYPAIPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A291S0C4_9ACTN (Methyltransf_21 domain-containing protein n=13 Tax=Streptomyces TaxID=1883 RepID=A0A291S0C4_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 5.270e-13
Identity = 47/107 (43.93%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            EVFV R Y +HGIR+   A VVD GAN+G+FSL    E    +++AFEPIP IY  L  NL    +  VK         +R ALG    E+  F ++   PG STRH
Sbjct:   15 EVFVDRDYLKHGIRIPGSARVVDVGANVGMFSLFVVGECPDARILAFEPIPEIYQALRENLSRYGAKGVKP--------VRAALGGLPEEKVRFTYFPALPGNSTRH 113
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: UPI0016739E92 (FkbM family methyltransferase n=1 Tax=Streptomyces capitiformicae TaxID=2014920 RepID=UPI0016739E92)

HSP 1 Score: 78.6 bits (192), Expect = 6.900e-13
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEE-EFYFYRDNPGESTRH 321
            E+F  R+Y +HGI + + + VVDAGAN+GLFSL   +E  G +++AFEPIP I+  L+ NL    +  V+          R ALG    +E  F FY   PG STR+
Sbjct:   34 EIFFERTYLKHGITLSDSSRVVDAGANVGLFSLFVKQEFPGAKILAFEPIPAIHRALLGNLDEHGAKDVE--------VHRAALGRRHEDEVRFTFYPALPGNSTRY 132
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Match: A0A0C5VNW6_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Gynuella sunshinyii YC6258 TaxID=1445510 RepID=A0A0C5VNW6_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 3.360e-12
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    4 EVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEPIPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEEFYFY 291
            E+FV ++Y + GI VE G VV+D GANIG+FSL    E K VQ+ AFEP P  YDVL +NL             P  VAL   +  +  E EF FY
Sbjct:  420 EIFVEKTYLKKGITVERGEVVIDIGANIGMFSLFIASEFKEVQIFAFEPSPATYDVLNKNLALYI---------PNAVALPFGVSNQDGEAEFVFY 506
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1055.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM3_ECTSI4.340e-8793.10FkbM n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A101SVT2_9ACTN4.050e-1644.86Methyltransf_21 domain-containing protein n=1 Tax=... [more]
A0A370ASV3_9ACTN3.970e-1542.06FkbM family methyltransferase n=1 Tax=Streptomyces... [more]
A0A0N1NKX6_9ACTN1.700e-1441.12Methyltransferase FkbM family n=3 Tax=Actinomyceti... [more]
UPI0006E3758B1.700e-1442.99FkbM family methyltransferase n=1 Tax=Streptomyces... [more]
A0A1A9C7P2_9ACTN3.160e-1442.99Methyltransferase, FkbM family n=1 Tax=Streptomyce... [more]
UPI00196289BA1.090e-1345.37FkbM family methyltransferase n=1 Tax=Streptomyces... [more]
A0A291S0C4_9ACTN5.270e-1343.93Methyltransf_21 domain-containing protein n=13 Tax... [more]
UPI0016739E926.900e-1342.06FkbM family methyltransferase n=1 Tax=Streptomyces... [more]
A0A0C5VNW6_9GAMM3.360e-1245.833-hydroxyacyl-CoA dehydrogenase n=1 Tax=Gynuella s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1055contigE-siliculosus-1a_F_contig1055:32536..35861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size438
Model size1195
Exons4
Ec32 orthologEc-12_000350.1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CZ5Z@1,2S8ND@2759
EggNOG free text desc.Methyltransferase
Seed eggNOG ortholog2880.D8LRM3
Seed ortholog evalue4.5e-71
Seed ortholog score273.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1055.400.1prot_E-siliculosus-1a_F_contig1055.400.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1055 33293..35861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.2859554-UTR-E-siliculosus-1a_F_contig1055:32535..332921622927557.2859554-UTR-E-siliculosus-1a_F_contig1055:32535..33292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1055 32536..33292 -
1696318584.7282717-UTR-E-siliculosus-1a_F_contig1055:32535..332921696318584.7282717-UTR-E-siliculosus-1a_F_contig1055:32535..33292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1055 32536..33292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.3057613-CDS-E-siliculosus-1a_F_contig1055:33292..333181622927557.3057613-CDS-E-siliculosus-1a_F_contig1055:33292..33318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 33293..33318 -
1696318584.740745-CDS-E-siliculosus-1a_F_contig1055:33292..333181696318584.740745-CDS-E-siliculosus-1a_F_contig1055:33292..33318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 33293..33318 -
1622927557.320116-CDS-E-siliculosus-1a_F_contig1055:33944..340391622927557.320116-CDS-E-siliculosus-1a_F_contig1055:33944..34039Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 33945..34039 -
1696318584.7504718-CDS-E-siliculosus-1a_F_contig1055:33944..340391696318584.7504718-CDS-E-siliculosus-1a_F_contig1055:33944..34039Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 33945..34039 -
1622927557.3320878-CDS-E-siliculosus-1a_F_contig1055:34362..345471622927557.3320878-CDS-E-siliculosus-1a_F_contig1055:34362..34547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 34363..34547 -
1696318584.7606108-CDS-E-siliculosus-1a_F_contig1055:34362..345471696318584.7606108-CDS-E-siliculosus-1a_F_contig1055:34362..34547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 34363..34547 -
1622927557.3482256-CDS-E-siliculosus-1a_F_contig1055:35729..358611622927557.3482256-CDS-E-siliculosus-1a_F_contig1055:35729..35861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 35730..35861 -
1696318584.7703557-CDS-E-siliculosus-1a_F_contig1055:35729..358611696318584.7703557-CDS-E-siliculosus-1a_F_contig1055:35729..35861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1055 35730..35861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1055.400.1

>prot_E-siliculosus-1a_F_contig1055.400.1 ID=prot_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=146bp
QEVFVRRSYFQHGIRVEEGAVVVDAGANIGLFSLQCPREAKGVQVIAFEP
IPVIYDVLVRNLFNATSGSVKEGTCPKPVALRVALGAEQAEEEFYFYRDN
PGESTRHRGERGEQRQALDADVDAASWRRVVEERKHPDRARGARY*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1055:32536..35861-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1055.400.1 ID=mRNA_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:32536..35861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAAGTGTTTGTGAGGCGCTCTTATTTTCAGCATGGCATCCGTGTCGA
GGAAGGTGCCGTCGTTGTCGACGCTGGTGCAAACATTGGGCTATTCTCGC
TGCAATGTCCCAGAGAGGCAAAAGGGGTGCAGGTACTCGCTTGCCCTAGG
CTTCCGATTTCAACGACACACCGTCGGTCATACTGTAATCAAGATAGAGA
GGCTGTGGGAGCATCTCGCGAAGCATTCACCATACCAGCACTTTCCTAAA
GTACACGTGGCCACGGCTTCTTTGCATTTTACAAGACCTTTGGCGCTGAT
GCCTGCGTATGCCATTTTCCATGTGTCATTTTCACCTTTTTCCCCATCTC
CACCACGGCATCCCTCTCCACCACTTACAACAGGAACATTTTCTCGGTAG
GTCAACCTTGTTTCCTTTCCTCGTTTAAAAGGCGCAGCTGTAAATTATCC
TCACGGCAGTTGTTGCCGAATCCCTCTGGTTGTGTGGATTTATAAGTCGT
CTCTTTATTTTACCTCTCGCGTAAGCTCATGCAATATCAGAAGCAACCGC
ATTTACGTTTTGCGTTCCCGCATCGTTCGCCTATGACTTCTTCTTTTTCT
TGCCTGGTGTCTGCTGCCTCCTCTCGATGACATTTTGGCGTCAGTATTTG
GTCGCTTGTTTTCTCTGCTCGTGTCTCTCGGCACGACTCTTCCCTATTCC
TGCTGGCCCTTTGGTTGCTCTCTGGCATCACACTGTTCCTTTCTTTGGCC
AGGTGCCACGTTTCTTCTCTTTTGTTGCCTGGCAAGGTTTTATTCTAGTT
GTTATGTGTGTTGCCTTCTTTGTATTTCATATTTGATAACCGCCAGACAA
GACTTCGAAAAGGAACAAAAGCGTGATGTTGGCGAAACCCTCCGCCATAA
CATTTGTATTATCAATGTCAAGAGGTTCAGTGAACACCTTTGTTGCACCT
TGTTTCCAAAAGCGCACCGTTAGTTCATTCTCTGAGTAGGAGGAGCATTG
GACAACCTTCACTTTGTTCTGGTTGTCTTCAATATTCGAATCGGAGAACA
ACGTGTCATCGCAAGCTTCGAGATTGGATTCCTGATACAAGGAGGTTCAT
GCCGTTGGCAGCACGAACCAGTAATGTACAGATTTTTCTTTTGGCGTCCT
CAATCTGGGGAGGCCCCTCCTGGCGCAGTTCCTAGCTATTGAGAGGAAAT
CGTGCTTACTAAGGCGTCGTCGTGGGCCAGGTTTGGCACGATTCATGAAT
ATTACCAAACAATCAGCAGTCAACCATACCCGTCATCGACATACGACAAC
GCCTATCGTAACAGGTTATTGCCTTTGAGCCGATCCCGGTGATTTACGAC
GTTCTAGTCCGCAACCTGTTCAACGCCACCTCGGGTTCCGTCAAGGAGGG
AACCTGTCCGAAGCCCGTCGCCCTTCGTGTAGCTCTAGGGGCCGAACAGG
CTGAAGAGGAGTTCTACTTTTACCGAGACAACCCGGGAGAAAGCACCAGG
TGAAGACCAAGCCTACACCGCTCGAACTATATGGTTCTCGTAAGCTGAGC
CAAAGGCAAGATGATAGAAACTTGCAAGCAAAGGTAAAAATGAAACAAGC
AGGTTTATGTCCTCATCGTAAGTGACATGGAACATTCATATGCTGGTAGC
TCTGCCGCTGGAGCGCCCTCCAGCAGGAGAACTCAGATGTTGTCATTTCT
GCGGTCGCCACTGTACCCCCGCTGGCTGGTTTCTAGGCTTGCAGCCCGTG
TTGTAGTACTAACACCGGAGAGTATGTTGCCACGCCTGACCGTATCATGG
ATTGTACTTTATGTCTCTAAAGGCATCGAGGAGAGCGTGGGGAGCAGCGG
CAAGCTTTAGACGCGGACGTAGACGCCGCATCTTGGCGACGAGTTGTTGA
AGAAAGAAAACATCCAGGTGGCGAAGATGTAGCGGGAGCTCACAACGGTG
TCTGTGAAAATAAGCCGGAAGAGGAAGGGGGCGAGCCTTCAGTGTGTAAT
GTGGTGCCATTGTCACTCGCTCTCCATCAGCTGGGGGTAGCTGGCGTGGA
CTTGTTGAAAGTGGATGTGGAAGGTGACGAGCTTGCGGTACTTCATGGCA
TCGATGACGACGACTGGCCGAAGATCCGCCAGGCGAGATTGGATTGTCAG
GGCAAGGATGCTAGCATGCTCTCGTCGTCGCTTGCATAGGAAGTCCTCAA
TGCTGAGAAGTCAAGTTGGCCATGTGTCGCATGGCTTGCATTTGTCAGCG
GTCAACAAGACCTGGTTTGCTAACAAGTTCTTTGACTGCTCCTTTCCCTG
TTTCCAAAGACATGGGTTGGCCAATCAACGAGTAAATTGGCAAAGAAAAA
TGGCGGTTATGACCCGTCTCCCCGCTCCATTCATCTCCAACTCTTCGGTT
GCATCACCGTGTTTTTTTTCTGGCCTCGCCCGCTGTCACGGCGCCGGGTT
GGCCTACTCGAAGCGTACTTCGTCGAAGTCCCTACGCAATGCTCTTCGAT
TGATGGGAACCGTCCGGTTTTGGCCCTTCACCGCTTGTTGCAGATCGCGC
TAGAGGTGCACGATATTGATGGGCGACTGGCTGCGACTATCAGAATCTTG
ACATCCGAACCGGCGGCTTTCGACGAGGTCTGCTGGCAGCCGTTGCTCAC
GAGCGAGGTCAAGGGCTACGTCATGGTTGTTCCTAAGGCCCTCCAGATGT
TCCTCGTGTTTGCAAAGCGGCGACCGAAGAAAGCCCCTTCCGCTGATGAT
GGATCCGCAGGAGGACGAGGAGCGGAAGCACCAAGTGTCACGGGTTCGGT
GCTCGAAGGTGGCGAACAGGCAGGGGGTGCCCACTTACCACATATTGTTG
GAGAAAGCAAGGGTGACAGCGGAGCATACGAGGGAACAATCCCCCCATCG
TGTTGCTCCTGCGTCTCCGCTGACCGCTAGTCTGTGCTCGGCTGATCTGA
TGCTACTTGGTGGGGCTACGAATATACGCCTAGATGTTCGATCCGCAGAA
AACGGGTGGGGACGAGCAAGAATAGGTCGACAATATTTCGTCGTAAAGTC
GCACATGGTCGACTCGTCAGTGATAACGACGTCGGAGACTGCTTGCTCAA
TATGAGCATCACATAAGATCTCGAAGGCAAACGTTCGACGTCCTGCCGGT
TTGATGGAAGTGGACCTCCTGACAAAGGGCGTTCAACAGGGGGCAGGTCT
TTGGTACTGTTGGCAGTGTGCACACGAACGTGTCTGCCCACAGGGTTCCG
TCCAAGAATCGGTGTAACAGCAGCAATCACGTCGAATGACGAATGGCAGG
TTGCGAATACGGTTCGTTGGGGGTGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1055:32536..35861-

>mRNA_E-siliculosus-1a_F_contig1055.400.1 ID=mRNA_E-siliculosus-1a_F_contig1055.400.1|Name=mRNA_E-siliculosus-1a_F_contig1055.400.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:32536..35861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAAGTGTTTGTGAGGCGCTCTTATTTTCAGCATGGCATCCGTGTCGA
GGAAGGTGCCGTCGTTGTCGACGCTGGTGCAAACATTGGGCTATTCTCGC
TGCAATGTCCCAGAGAGGCAAAAGGGGTGCAGCAGGAAGTGTTTGTGAGG
CGCTCTTATTTTCAGCATGGCATCCGTGTCGAGGAAGGTGCCGTCGTTGT
CGACGCTGGTGCAAACATTGGGCTATTCTCGCTGCAATGTCCCAGAGAGG
CAAAAGGGGTGCAGGTTATTGCCTTTGAGCCGATCCCGGTGATTTACGAC
GTTCTAGTCCGCAACCTGTTCAACGCCACCTCGGGTTCCGTCAAGGAGGG
AACCTGTCCGAAGCCCGTCGCCCTTCGTGTAGCTCTAGGGGCCGAACAGG
CTGAAGAGGAGTTCTACTTTTACCGAGACAACCCGGGAGAAAGCACCAGG
TTATTGCCTTTGAGCCGATCCCGGTGATTTACGACGTTCTAGTCCGCAAC
CTGTTCAACGCCACCTCGGGTTCCGTCAAGGAGGGAACCTGTCCGAAGCC
CGTCGCCCTTCGTGTAGCTCTAGGGGCCGAACAGGCTGAAGAGGAGTTCT
ACTTTTACCGAGACAACCCGGGAGAAAGCACCAGGCATCGAGGAGAGCGT
GGGGAGCAGCGGCAAGCTTTAGACGCGGACGTAGACGCCGCATCTTGGCG
ACGAGTTGTTGAAGAAAGAAAACATCCAGGCATCGAGGAGAGCGTGGGGA
GCAGCGGCAAGCTTTAGACGCGGACGTAGACGCCGCATCTTGGCGACGAG
TTGTTGAAGAAAGAAAACATCCAGATCGCGCTAGAGGTGCACGATATTGA
ATCGCGCTAGAGGTGCACGATATTGA
back to top