Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10547.396.1 vs. uniprot
Match: D8LE68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE68_ECTSI) HSP 1 Score: 268 bits (686), Expect = 6.420e-89 Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 1 Query: 1 GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRIAQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD 405
GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRI+QPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD
Sbjct: 83 GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRISQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD 217
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 384 |
| Model size | 405 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927556.3617315-UTR-E-siliculosus-1a_F_contig10547:1017..1038 | 1622927556.3617315-UTR-E-siliculosus-1a_F_contig10547:1017..1038 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10547 1018..1038 + |
| 1696318584.1532428-UTR-E-siliculosus-1a_F_contig10547:1017..1038 | 1696318584.1532428-UTR-E-siliculosus-1a_F_contig10547:1017..1038 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10547 1018..1038 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10547.396.1 >prot_E-siliculosus-1a_F_contig10547.396.1 ID=prot_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRIAQPRGSNRAAG
GGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGP
VLAVACHPSRTIVAACLSDGTICLWDYD back to topmRNA from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10547.396.1 ID=mRNA_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1309bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGACGCTTGCTGGCCACCATGGTCGTCGGGGAGGGCGGAAAGGCGCT
GCTCGCCCAGTTCTACCAAAAACACGGCTGCATCGCCATCTCTGACGTCA
CCAGGCAAGAGACCCTCCAATCAGCGTCTCGTAGACGATAATTCTCACTA
CCGCTGCTGGTTCAGTTGCTTGACGCTTGCTGCGTCGAGGATGAGCGTGC
TATGCCGGCAGTACGATCAGTGTCACTCTGCCGCCTTTCTTTTTTCAACA
CAAAGAACCACCCACTGTCTCTTGGCGCCCATCCACCCTATCTACGCTGC
TTGGTACACACACTTCGTGGCGAACACACGTTGTTTTCTAGCTTTTTTTT
TGTGTCACATCCATGTGTTTGCCGTGCTCCCACTGCCCCTCTCCACGTTA
CCCCCAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCATTGCGCAGCCT
CGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCATGGCCGGTTC
CTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCAGGCCTTTCGG
CGCTACAGGTGCAAGCAAGGCTAAGATGGGTGGGGTGGGATGCATGCGGG
AGTCGTCGGGCGAAGTTGCCTTCTGCTGAGCCTCCCTCGTCAACCACTTG
TATCGCCACTTGTATCAGTAGTGCGAATGGTCACGGGCTAGCCGAATTGA
AGACGTTGGGGAACTGAACGGCTGTCAAGTCAATTACCCGTGTTGGTCCC
GTTGCCGTTGAGGTTAGACAAGATAATCCAGGTCATCCCCCTCATATTCA
GTGTCTTTTTGTACGCCAAACTTATAGAAGGCGCTGCAATGTATTATGGA
TACGTTCAGTTTATTCTTGTCGTGTGCCATACTTGGCCGTCCGCAAAGCT
GTTGTTCGACTTTTGTGCAGTCTAGATCGTGTATTCACGTGTTTTTTGTG
TCTTGACGACTCGCGTAAGATTCTGTTAAAATTCCTGGTACACAGGGAGG
AACACCTGACTTAGCCTAGCCTTAGCCTAGCCTTACATCCCCGGCGTAGT
GTTCCTTCTGCTCCATCCTCCATCGCCCACTCACGACCTCTTCTCCGGAC
ACCGCGCACGCACACACCCACGCACACGCCATGTTTTCGGTTCGTCCACC
TCCGAGCAGGCGGTCAGAGTCGACCCCTGGGACGGCCTTGGCTCCCTCAG
CCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCTGTCACCCCT
CGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATATGTCTGTGG
GACTACGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ >mRNA_E-siliculosus-1a_F_contig10547.396.1 ID=mRNA_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGTCGGGGAGGGCGGAAAGGCGCTGCTCGCCCAGTTCTACCAAAA
ACACGGCTGCATCGCCATCTCTGACGTCACCAGATGGTCGTCGGGGAGGG
CGGAAAGGCGCTGCTCGCCCAGTTCTACCAAAAACACGGCTGCATCGCCA
TCTCTGACGTCACCAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCATT
GCGCAGCCTCGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCAT
GGCCGGTTCCTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCAG
GCCTTTCGGCGCTACAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCAT
TGCGCAGCCTCGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCA
TGGCCGGTTCCTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCA
GGCCTTTCGGCGCTACAGGCGGTCAGAGTCGACCCCTGGGACGGCCTTGG
CTCCCTCAGCCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCT
GTCACCCCTCGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATA
TGTCTGTGGGACTACGACGCGGTCAGAGTCGACCCCTGGGACGGCCTTGG
CTCCCTCAGCCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCT
GTCACCCCTCGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATA
TGTCTGTGGGACTACGAC back to top
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