mRNA_E-siliculosus-1a_F_contig10547.396.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10547.396.1
Unique NamemRNA_E-siliculosus-1a_F_contig10547.396.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10547.396.1 vs. uniprot
Match: D8LE68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE68_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 6.420e-89
Identity = 134/135 (99.26%), Postives = 135/135 (100.00%), Query Frame = 1 
Query:    1 GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRIAQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD 405
            GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRI+QPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD
Sbjct:   83 GGRLLATMVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRISQPRGSNRAAGGGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGPVLAVACHPSRTIVAACLSDGTICLWDYD 217
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10547.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE68_ECTSI6.420e-8999.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10547contigE-siliculosus-1a_F_contig10547:1018..2326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size384
Model size405
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10547.396.1prot_E-siliculosus-1a_F_contig10547.396.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10547 1039..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.3617315-UTR-E-siliculosus-1a_F_contig10547:1017..10381622927556.3617315-UTR-E-siliculosus-1a_F_contig10547:1017..1038Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10547 1018..1038 +
1696318584.1532428-UTR-E-siliculosus-1a_F_contig10547:1017..10381696318584.1532428-UTR-E-siliculosus-1a_F_contig10547:1017..1038Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10547 1018..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.3767464-CDS-E-siliculosus-1a_F_contig10547:1038..11211622927556.3767464-CDS-E-siliculosus-1a_F_contig10547:1038..1121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 1039..1121 +
1696318584.1639087-CDS-E-siliculosus-1a_F_contig10547:1038..11211696318584.1639087-CDS-E-siliculosus-1a_F_contig10547:1038..1121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 1039..1121 +
1622927556.3896432-CDS-E-siliculosus-1a_F_contig10547:1424..15751622927556.3896432-CDS-E-siliculosus-1a_F_contig10547:1424..1575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 1425..1575 +
1696318584.1736398-CDS-E-siliculosus-1a_F_contig10547:1424..15751696318584.1736398-CDS-E-siliculosus-1a_F_contig10547:1424..1575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 1425..1575 +
1622927556.407903-CDS-E-siliculosus-1a_F_contig10547:2176..23261622927556.407903-CDS-E-siliculosus-1a_F_contig10547:2176..2326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 2177..2326 +
1696318584.1828704-CDS-E-siliculosus-1a_F_contig10547:2176..23261696318584.1828704-CDS-E-siliculosus-1a_F_contig10547:2176..2326Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10547 2177..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10547.396.1

>prot_E-siliculosus-1a_F_contig10547.396.1 ID=prot_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
MVVGEGGKALLAQFYQKHGCIAISDVTRGLHRGFVRLRIAQPRGSNRAAG
GGVQCMAGSLTANSGLVFLGRAGLSALQAVRVDPWDGLGSLSQPLPDSGP
VLAVACHPSRTIVAACLSDGTICLWDYD
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mRNA from alignment at E-siliculosus-1a_F_contig10547:1018..2326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10547.396.1 ID=mRNA_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1309bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGACGCTTGCTGGCCACCATGGTCGTCGGGGAGGGCGGAAAGGCGCT
GCTCGCCCAGTTCTACCAAAAACACGGCTGCATCGCCATCTCTGACGTCA
CCAGGCAAGAGACCCTCCAATCAGCGTCTCGTAGACGATAATTCTCACTA
CCGCTGCTGGTTCAGTTGCTTGACGCTTGCTGCGTCGAGGATGAGCGTGC
TATGCCGGCAGTACGATCAGTGTCACTCTGCCGCCTTTCTTTTTTCAACA
CAAAGAACCACCCACTGTCTCTTGGCGCCCATCCACCCTATCTACGCTGC
TTGGTACACACACTTCGTGGCGAACACACGTTGTTTTCTAGCTTTTTTTT
TGTGTCACATCCATGTGTTTGCCGTGCTCCCACTGCCCCTCTCCACGTTA
CCCCCAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCATTGCGCAGCCT
CGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCATGGCCGGTTC
CTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCAGGCCTTTCGG
CGCTACAGGTGCAAGCAAGGCTAAGATGGGTGGGGTGGGATGCATGCGGG
AGTCGTCGGGCGAAGTTGCCTTCTGCTGAGCCTCCCTCGTCAACCACTTG
TATCGCCACTTGTATCAGTAGTGCGAATGGTCACGGGCTAGCCGAATTGA
AGACGTTGGGGAACTGAACGGCTGTCAAGTCAATTACCCGTGTTGGTCCC
GTTGCCGTTGAGGTTAGACAAGATAATCCAGGTCATCCCCCTCATATTCA
GTGTCTTTTTGTACGCCAAACTTATAGAAGGCGCTGCAATGTATTATGGA
TACGTTCAGTTTATTCTTGTCGTGTGCCATACTTGGCCGTCCGCAAAGCT
GTTGTTCGACTTTTGTGCAGTCTAGATCGTGTATTCACGTGTTTTTTGTG
TCTTGACGACTCGCGTAAGATTCTGTTAAAATTCCTGGTACACAGGGAGG
AACACCTGACTTAGCCTAGCCTTAGCCTAGCCTTACATCCCCGGCGTAGT
GTTCCTTCTGCTCCATCCTCCATCGCCCACTCACGACCTCTTCTCCGGAC
ACCGCGCACGCACACACCCACGCACACGCCATGTTTTCGGTTCGTCCACC
TCCGAGCAGGCGGTCAGAGTCGACCCCTGGGACGGCCTTGGCTCCCTCAG
CCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCTGTCACCCCT
CGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATATGTCTGTGG
GACTACGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10547:1018..2326+

>mRNA_E-siliculosus-1a_F_contig10547.396.1 ID=mRNA_E-siliculosus-1a_F_contig10547.396.1|Name=mRNA_E-siliculosus-1a_F_contig10547.396.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10547:1018..2326+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCGTCGGGGAGGGCGGAAAGGCGCTGCTCGCCCAGTTCTACCAAAA
ACACGGCTGCATCGCCATCTCTGACGTCACCAGATGGTCGTCGGGGAGGG
CGGAAAGGCGCTGCTCGCCCAGTTCTACCAAAAACACGGCTGCATCGCCA
TCTCTGACGTCACCAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCATT
GCGCAGCCTCGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCAT
GGCCGGTTCCTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCAG
GCCTTTCGGCGCTACAGAGGTCTACACCGAGGGTTCGTCCGTCTTCGCAT
TGCGCAGCCTCGCGGTAGCAACAGAGCCGCAGGCGGCGGGGTCCAGTGCA
TGGCCGGTTCCTTGACCGCTAACAGCGGGCTCGTTTTCCTTGGGAGAGCA
GGCCTTTCGGCGCTACAGGCGGTCAGAGTCGACCCCTGGGACGGCCTTGG
CTCCCTCAGCCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCT
GTCACCCCTCGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATA
TGTCTGTGGGACTACGACGCGGTCAGAGTCGACCCCTGGGACGGCCTTGG
CTCCCTCAGCCAACCCCTACCTGACTCGGGACCGGTGCTAGCCGTGGCCT
GTCACCCCTCGAGGACCATCGTTGCTGCCTGCCTATCCGACGGTACCATA
TGTCTGTGGGACTACGAC
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