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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI) HSP 1 Score: 631 bits (1627), Expect = 3.750e-224 Identity = 386/462 (83.55%), Postives = 396/462 (85.71%), Query Frame = 1 Query: 1 MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAYPYRGPTAHPXXXXXXXXXXXGXXXXXXXXXAVTQGAAATAPPHGGAPAPAYPGLNAQHCAPCPPAYQAATST-------------------------TVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
MAGQPTVYYVTYTNPA AGG FVGGGG SS+GAPHV ARQQAPEPPPAYPYRG TA+P XXXXXXXXXX XXXXXXXXXAVTQGAAATAPPHGGAPA YPGLNAQH AP PPAYQAAT+T TV GYFPAAPGADSS DDPSGSRRG XXX AATEVA ESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDE+DDDTPE NASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKS HKIPPGDMRHCGGTCLVHFVAPFSWGLV+WAGG+ S+ YG NAPCGGGTGGDGLESYL ISGALMAVFGTGMLALSFVTLMFAC XXXXXXXXXXXXXGCCS+ARDAVHK+FMSKSPIFDLAWQVQSV+LSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV
Sbjct: 1 MAGQPTVYYVTYTNPASAGGEFVGGGG-SSVGAPHVDRARQQAPEPPPAYPYRGSTAYPPXXXXXXXXXXXXXXXXXXXXAVTQGAAATAPPHGGAPA--YPGLNAQHGAPRPPAYQAATTTVLGXXXXXXXXXXXXXXXXXXXXXTTVPAYPGINVQHRGYFPAAPGADSSSDDPSGSRRGTKXXXEEAATEVARESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEDDDDTPEENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXGCCSKARDAVHKRFMSKSPIFDLAWQVQSVLLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 459
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE) HSP 1 Score: 449 bits (1156), Expect = 1.430e-154 Identity = 258/339 (76.11%), Postives = 269/339 (79.35%), Query Frame = 1 Query: 295 PAYPGLNAQHCAPCPPAYQAATSTTVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
PAYPGLN QH GYFPAAPGADSS DDPSGSRRG A TEVAHESR WKWAMFVLGNLISLAVVASEIGEL+VCFEEN +E+DDDT E NAS A+G LM LVL LLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGT LVHFVAPF WGLV++ GG AS YG NAPCGGG GGDG+ESYL+ISG LM VFGTGMLALSFV LM AC XXXXXXXXX GCCSRARDAVHK+ MSKSPIFDLAWQVQSV+LSYRAGAV+LASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI V
Sbjct: 23 PAYPGLNVQH--------------------------RGYFPAAPGADSSSDDPSGSRRGMKKKEKEAVTEVAHESRSWKWAMFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXX----GCCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPIIV 331
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 1 |
Stop | 1 |
Cds size | 1311 |
Model size | 1311 |
Exons | 2 |
Ec32 ortholog | Ec-03_002380.1 |
Ec32 ortholog description | expressed unknown protein |
Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10543.395.1 >prot_E-siliculosus-1a_F_contig10543.395.1 ID=prot_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=437bp
MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAY PYRGPTAHPPSAPPAHPISNGARPPPPAYPAVTQGAAATAPPHGGAPAPA YPGLNAQHCAPCPPAYQAATSTTVPAYPGLNVQHNGYFPAAPGADSSDDP SGSRRGKKKKKEEAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNV CFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSP LDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAP CGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSSSSS SSRPPAARRGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSL ASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV* back to topmRNA from alignment at E-siliculosus-1a_F_contig10543:586..2282+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGCGGGCCAACCTACGGTGTACTACGTCACGGTGAGTGTTTCCCCCCC
TTCCGTAGCAGCAAACGTTATCGCCTTCTTGGCCACAACGGCCTTGGAGA
ACGGAGCTATTGCACAAAGCTTGATTGTTCTTTTGCGTTTGCCGTACGGC
AGACGATCTCTCTCGGCCGTCGAGTGACGGTCGCACCGTGTGGGCGCAGC
AGAAGTGCTTACGGTGATGATATCATCGTGGAAATTTTGGTACATGACGA
TGTGAGAGAGCGACCACTAACGTTTGGGTTTAGCTGGGACGCCCGTGCGA
TGGTAGAGATAGACGCAAACGTCTATCTACCCATGTATTTTCGTCAAACT
GCTTTTGATTGAATTCATGTCTTTTGGTTGTCGTCCTCTTGGATCCTTTT
TTTTTTGTTGCTTCGGCAGTACACGAACCCAGCAGACGCAGGAGGCGGAT
TCGTCGGAGGCGGTGGCGGTAGCAGTATTGGAGCACCGCATGTGGGCTGG
GCCCGACAGCAAGCTCCTGAGCCTCCTCCTGCCTACCCATACCGGGGCCC
GACCGCACATCCTCCTTCTGCCCCTCCCGCCCACCCCATCTCCAACGGCG
CCCGTCCTCCTCCTCCTGCCTACCCTGCTGTTACCCAGGGCGCAGCCGCA
ACCGCGCCGCCTCACGGCGGGGCCCCCGCCCCGGCATACCCGGGCCTCAA
CGCACAGCACTGTGCCCCCTGTCCTCCTGCCTACCAGGCCGCAACCTCCA
CCACCGTCCCCGCCTACCCGGGCCTCAACGTCCAGCACAACGGCTACTTT
CCTGCCGCCCCCGGCGCGGACAGCAGCGACGACCCGAGCGGTAGCCGGCG
AGGTAAGAAGAAGAAGAAGGAGGAGGCCGCCACCGAGGTGGCGCACGAGT
CGAGGAAGTGGAAGTGGGCCATGTTTGTCCTGGGGAACCTGATCTCCTTG
GCGGTGGTCGCGTCGGAGATCGGGGAGCTGAACGTGTGCTTCGAGGAGAA
CCTGGACGAGGAGGACGACGACACGCCGGAGCTGAACGCGTCCCGGGCGT
ACGGGGGGCTCATGTTCACCCTGGTGCTCGGCCTCCTCGTGGACTTCATC
TCCGCCGTCCTGCTCTCCCTGGTGTACCGCTCCCCGCTGGACATCAAGTC
CGCCCACAAGATCCCGCCGGGGGACATGCGGCACTGCGGCGGCACGTGCC
TTGTGCATTTCGTGGCGCCGTTCTCCTGGGGGCTGGTCTTCTGGGCCGGC
GGCTTCGCGAGCTTGAAGTACGGGGGCAACGCCCCCTGCGGCGGCGGCAC
CGGCGGCGACGGGCTGGAGTCCTACCTGAGGATTTCCGGCGCCCTGATGG
CCGTGTTCGGGACCGGGATGCTGGCCCTCTCGTTCGTCACGCTAATGTTC
GCGTGCTACTCGTCGTCGTTGTCGTCGTCGTCGAGCTCTTCTCGGCCGCC
CGCTGCCCGCCGGGGTTGCTGTTCCAGGGCGCGGGACGCGGTGCACAAGA
AGTTCATGTCCAAGAGCCCGATCTTCGACCTGGCCTGGCAGGTGCAGAGT
GTTGTCCTGTCCTACCGGGCCGGGGCGGTGAGCCTGGCGTCGGCCTTCCT
CCTTGTCTCGTCGGGGGTGGTGGGGGAGGTGCTGGCCGCCTTCGGAAGCC
TGGCGCCCGAGGAGATCCAGGAGCTTGTTGGGCCAATAAGCGTGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10543:586..2282+ >mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2622bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGGCGGGCCAACCTACGGTGTACTACGTCACGATGGCGGGCCAACCTAC GGTGTACTACGTCACGTACACGAACCCAGCAGACGCAGGAGGCGGATTCG TCGGAGGCGGTGGCGGTAGCAGTATTGGAGCACCGCATGTGGGCTGGGCC CGACAGCAAGCTCCTGAGCCTCCTCCTGCCTACCCATACCGGGGCCCGAC CGCACATCCTCCTTCTGCCCCTCCCGCCCACCCCATCTCCAACGGCGCCC GTCCTCCTCCTCCTGCCTACCCTGCTGTTACCCAGGGCGCAGCCGCAACC GCGCCGCCTCACGGCGGGGCCCCCGCCCCGGCATACCCGGGCCTCAACGC ACAGCACTGTGCCCCCTGTCCTCCTGCCTACCAGGCCGCAACCTCCACCA CCGTCCCCGCCTACCCGGGCCTCAACGTCCAGCACAACGGCTACTTTCCT GCCGCCCCCGGCGCGGACAGCAGCGACGACCCGAGCGGTAGCCGGCGAGG TAAGAAGAAGAAGAAGGAGGAGGCCGCCACCGAGGTGGCGCACGAGTCGA GGAAGTGGAAGTGGGCCATGTTTGTCCTGGGGAACCTGATCTCCTTGGCG GTGGTCGCGTCGGAGATCGGGGAGCTGAACGTGTGCTTCGAGGAGAACCT GGACGAGGAGGACGACGACACGCCGGAGCTGAACGCGTCCCGGGCGTACG GGGGGCTCATGTTCACCCTGGTGCTCGGCCTCCTCGTGGACTTCATCTCC GCCGTCCTGCTCTCCCTGGTGTACCGCTCCCCGCTGGACATCAAGTCCGC CCACAAGATCCCGCCGGGGGACATGCGGCACTGCGGCGGCACGTGCCTTG TGCATTTCGTGGCGCCGTTCTCCTGGGGGCTGGTCTTCTGGGCCGGCGGC TTCGCGAGCTTGAAGTACGGGGGCAACGCCCCCTGCGGCGGCGGCACCGG CGGCGACGGGCTGGAGTCCTACCTGAGGATTTCCGGCGCCCTGATGGCCG TGTTCGGGACCGGGATGCTGGCCCTCTCGTTCGTCACGCTAATGTTCGCG TGCTACTCGTCGTCGTTGTCGTCGTCGTCGAGCTCTTCTCGGCCGCCCGC TGCCCGCCGGGGTTGCTGTTCCAGGGCGCGGGACGCGGTGCACAAGAAGT TCATGTCCAAGAGCCCGATCTTCGACCTGGCCTGGCAGGTGCAGAGTGTT GTCCTGTCCTACCGGGCCGGGGCGGTGAGCCTGGCGTCGGCCTTCCTCCT TGTCTCGTCGGGGGTGGTGGGGGAGGTGCTGGCCGCCTTCGGAAGCCTGG CGCCCGAGGAGATCCAGGAGCTTGTTGGGCCAATAAGCGTGTGATACACG AACCCAGCAGACGCAGGAGGCGGATTCGTCGGAGGCGGTGGCGGTAGCAG TATTGGAGCACCGCATGTGGGCTGGGCCCGACAGCAAGCTCCTGAGCCTC CTCCTGCCTACCCATACCGGGGCCCGACCGCACATCCTCCTTCTGCCCCT CCCGCCCACCCCATCTCCAACGGCGCCCGTCCTCCTCCTCCTGCCTACCC TGCTGTTACCCAGGGCGCAGCCGCAACCGCGCCGCCTCACGGCGGGGCCC CCGCCCCGGCATACCCGGGCCTCAACGCACAGCACTGTGCCCCCTGTCCT CCTGCCTACCAGGCCGCAACCTCCACCACCGTCCCCGCCTACCCGGGCCT CAACGTCCAGCACAACGGCTACTTTCCTGCCGCCCCCGGCGCGGACAGCA GCGACGACCCGAGCGGTAGCCGGCGAGGTAAGAAGAAGAAGAAGGAGGAG GCCGCCACCGAGGTGGCGCACGAGTCGAGGAAGTGGAAGTGGGCCATGTT TGTCCTGGGGAACCTGATCTCCTTGGCGGTGGTCGCGTCGGAGATCGGGG AGCTGAACGTGTGCTTCGAGGAGAACCTGGACGAGGAGGACGACGACACG CCGGAGCTGAACGCGTCCCGGGCGTACGGGGGGCTCATGTTCACCCTGGT GCTCGGCCTCCTCGTGGACTTCATCTCCGCCGTCCTGCTCTCCCTGGTGT ACCGCTCCCCGCTGGACATCAAGTCCGCCCACAAGATCCCGCCGGGGGAC ATGCGGCACTGCGGCGGCACGTGCCTTGTGCATTTCGTGGCGCCGTTCTC CTGGGGGCTGGTCTTCTGGGCCGGCGGCTTCGCGAGCTTGAAGTACGGGG GCAACGCCCCCTGCGGCGGCGGCACCGGCGGCGACGGGCTGGAGTCCTAC CTGAGGATTTCCGGCGCCCTGATGGCCGTGTTCGGGACCGGGATGCTGGC CCTCTCGTTCGTCACGCTAATGTTCGCGTGCTACTCGTCGTCGTTGTCGT CGTCGTCGAGCTCTTCTCGGCCGCCCGCTGCCCGCCGGGGTTGCTGTTCC AGGGCGCGGGACGCGGTGCACAAGAAGTTCATGTCCAAGAGCCCGATCTT CGACCTGGCCTGGCAGGTGCAGAGTGTTGTCCTGTCCTACCGGGCCGGGG CGGTGAGCCTGGCGTCGGCCTTCCTCCTTGTCTCGTCGGGGGTGGTGGGG GAGGTGCTGGCCGCCTTCGGAAGCCTGGCGCCCGAGGAGATCCAGGAGCT TGTTGGGCCAATAAGCGTGTGA back to top
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