mRNA_E-siliculosus-1a_F_contig10543.395.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10543.395.1
Unique NamemRNA_E-siliculosus-1a_F_contig10543.395.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: D8LCM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM0_ECTSI)

HSP 1 Score: 631 bits (1627), Expect = 3.750e-224
Identity = 386/462 (83.55%), Postives = 396/462 (85.71%), Query Frame = 1 
Query:    1 MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAYPYRGPTAHPXXXXXXXXXXXGXXXXXXXXXAVTQGAAATAPPHGGAPAPAYPGLNAQHCAPCPPAYQAATST-------------------------TVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
            MAGQPTVYYVTYTNPA AGG FVGGGG SS+GAPHV  ARQQAPEPPPAYPYRG TA+P XXXXXXXXXX XXXXXXXXXAVTQGAAATAPPHGGAPA  YPGLNAQH AP PPAYQAAT+T                         TV           GYFPAAPGADSS DDPSGSRRG  XXX  AATEVA ESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDE+DDDTPE NASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKS HKIPPGDMRHCGGTCLVHFVAPFSWGLV+WAGG+ S+ YG NAPCGGGTGGDGLESYL ISGALMAVFGTGMLALSFVTLMFAC      XXXXXXXXXXXXXGCCS+ARDAVHK+FMSKSPIFDLAWQVQSV+LSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV
Sbjct:    1 MAGQPTVYYVTYTNPASAGGEFVGGGG-SSVGAPHVDRARQQAPEPPPAYPYRGSTAYPPXXXXXXXXXXXXXXXXXXXXAVTQGAAATAPPHGGAPA--YPGLNAQHGAPRPPAYQAATTTVLGXXXXXXXXXXXXXXXXXXXXXTTVPAYPGINVQHRGYFPAAPGADSSSDDPSGSRRGTKXXXEEAATEVARESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEDDDDTPEENASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSTHKIPPGDMRHCGGTCLVHFVAPFSWGLVYWAGGYVSIMYGDNAPCGGGTGGDGLESYLTISGALMAVFGTGMLALSFVTLMFACXXXXXXXXXXXXXXXXXXXGCCSKARDAVHKRFMSKSPIFDLAWQVQSVLLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 459
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Match: A0A6H5JS15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS15_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 1.430e-154
Identity = 258/339 (76.11%), Postives = 269/339 (79.35%), Query Frame = 1 
Query:  295 PAYPGLNAQHCAPCPPAYQAATSTTVXXXXXXXXXXNGYFPAAPGADSS-DDPSGSRRGXXXXXXXAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNVCFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAPCGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSXXXXXXXXXXXXXGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV 1308
            PAYPGLN QH                           GYFPAAPGADSS DDPSGSRRG       A TEVAHESR WKWAMFVLGNLISLAVVASEIGEL+VCFEEN +E+DDDT E NAS A+G LM  LVL LLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGT LVHFVAPF WGLV++ GG AS  YG NAPCGGG GGDG+ESYL+ISG LM VFGTGMLALSFV LM AC      XXXXXXXXX    GCCSRARDAVHK+ MSKSPIFDLAWQVQSV+LSYRAGAV+LASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPI V
Sbjct:   23 PAYPGLNVQH--------------------------RGYFPAAPGADSSSDDPSGSRRGMKKKEKEAVTEVAHESRSWKWAMFVLGNLISLAVVASEIGELSVCFEENPEEDDDDTLEENASSAFGALMLNLVLSLLVDFISAVLLSLVYRSPLDIKSAHKIPPGDMRHCGGTFLVHFVAPFFWGLVYFTGGIASSMYGDNAPCGGGNGGDGMESYLKISGILMIVFGTGMLALSFVALMLACXXXXXXXXXXXXXXX----GCCSRARDAVHKRLMSKSPIFDLAWQVQSVLLSYRAGAVNLASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPIIV 331
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10543.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCM0_ECTSI3.750e-22483.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS15_9PHAE1.430e-15476.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10543contigE-siliculosus-1a_F_contig10543:586..2282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1311
Model size1311
Exons2
Ec32 orthologEc-03_002380.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927556.3059676-CDS-E-siliculosus-1a_F_contig10543:585..6181622927556.3059676-CDS-E-siliculosus-1a_F_contig10543:585..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10543 586..618 +
1696318584.1165996-CDS-E-siliculosus-1a_F_contig10543:585..6181696318584.1165996-CDS-E-siliculosus-1a_F_contig10543:585..618Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10543 586..618 +
1622927556.3188298-CDS-E-siliculosus-1a_F_contig10543:1004..22821622927556.3188298-CDS-E-siliculosus-1a_F_contig10543:1004..2282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10543 1005..2282 +
1696318584.1346567-CDS-E-siliculosus-1a_F_contig10543:1004..22821696318584.1346567-CDS-E-siliculosus-1a_F_contig10543:1004..2282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10543 1005..2282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10543.395.1prot_E-siliculosus-1a_F_contig10543.395.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10543 586..2282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10543.395.1

>prot_E-siliculosus-1a_F_contig10543.395.1 ID=prot_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=437bp
MAGQPTVYYVTYTNPADAGGGFVGGGGGSSIGAPHVGWARQQAPEPPPAY
PYRGPTAHPPSAPPAHPISNGARPPPPAYPAVTQGAAATAPPHGGAPAPA
YPGLNAQHCAPCPPAYQAATSTTVPAYPGLNVQHNGYFPAAPGADSSDDP
SGSRRGKKKKKEEAATEVAHESRKWKWAMFVLGNLISLAVVASEIGELNV
CFEENLDEEDDDTPELNASRAYGGLMFTLVLGLLVDFISAVLLSLVYRSP
LDIKSAHKIPPGDMRHCGGTCLVHFVAPFSWGLVFWAGGFASLKYGGNAP
CGGGTGGDGLESYLRISGALMAVFGTGMLALSFVTLMFACYSSSLSSSSS
SSRPPAARRGCCSRARDAVHKKFMSKSPIFDLAWQVQSVVLSYRAGAVSL
ASAFLLVSSGVVGEVLAAFGSLAPEEIQELVGPISV*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10543:586..2282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGGCCAACCTACGGTGTACTACGTCACGGTGAGTGTTTCCCCCCC
TTCCGTAGCAGCAAACGTTATCGCCTTCTTGGCCACAACGGCCTTGGAGA
ACGGAGCTATTGCACAAAGCTTGATTGTTCTTTTGCGTTTGCCGTACGGC
AGACGATCTCTCTCGGCCGTCGAGTGACGGTCGCACCGTGTGGGCGCAGC
AGAAGTGCTTACGGTGATGATATCATCGTGGAAATTTTGGTACATGACGA
TGTGAGAGAGCGACCACTAACGTTTGGGTTTAGCTGGGACGCCCGTGCGA
TGGTAGAGATAGACGCAAACGTCTATCTACCCATGTATTTTCGTCAAACT
GCTTTTGATTGAATTCATGTCTTTTGGTTGTCGTCCTCTTGGATCCTTTT
TTTTTTGTTGCTTCGGCAGTACACGAACCCAGCAGACGCAGGAGGCGGAT
TCGTCGGAGGCGGTGGCGGTAGCAGTATTGGAGCACCGCATGTGGGCTGG
GCCCGACAGCAAGCTCCTGAGCCTCCTCCTGCCTACCCATACCGGGGCCC
GACCGCACATCCTCCTTCTGCCCCTCCCGCCCACCCCATCTCCAACGGCG
CCCGTCCTCCTCCTCCTGCCTACCCTGCTGTTACCCAGGGCGCAGCCGCA
ACCGCGCCGCCTCACGGCGGGGCCCCCGCCCCGGCATACCCGGGCCTCAA
CGCACAGCACTGTGCCCCCTGTCCTCCTGCCTACCAGGCCGCAACCTCCA
CCACCGTCCCCGCCTACCCGGGCCTCAACGTCCAGCACAACGGCTACTTT
CCTGCCGCCCCCGGCGCGGACAGCAGCGACGACCCGAGCGGTAGCCGGCG
AGGTAAGAAGAAGAAGAAGGAGGAGGCCGCCACCGAGGTGGCGCACGAGT
CGAGGAAGTGGAAGTGGGCCATGTTTGTCCTGGGGAACCTGATCTCCTTG
GCGGTGGTCGCGTCGGAGATCGGGGAGCTGAACGTGTGCTTCGAGGAGAA
CCTGGACGAGGAGGACGACGACACGCCGGAGCTGAACGCGTCCCGGGCGT
ACGGGGGGCTCATGTTCACCCTGGTGCTCGGCCTCCTCGTGGACTTCATC
TCCGCCGTCCTGCTCTCCCTGGTGTACCGCTCCCCGCTGGACATCAAGTC
CGCCCACAAGATCCCGCCGGGGGACATGCGGCACTGCGGCGGCACGTGCC
TTGTGCATTTCGTGGCGCCGTTCTCCTGGGGGCTGGTCTTCTGGGCCGGC
GGCTTCGCGAGCTTGAAGTACGGGGGCAACGCCCCCTGCGGCGGCGGCAC
CGGCGGCGACGGGCTGGAGTCCTACCTGAGGATTTCCGGCGCCCTGATGG
CCGTGTTCGGGACCGGGATGCTGGCCCTCTCGTTCGTCACGCTAATGTTC
GCGTGCTACTCGTCGTCGTTGTCGTCGTCGTCGAGCTCTTCTCGGCCGCC
CGCTGCCCGCCGGGGTTGCTGTTCCAGGGCGCGGGACGCGGTGCACAAGA
AGTTCATGTCCAAGAGCCCGATCTTCGACCTGGCCTGGCAGGTGCAGAGT
GTTGTCCTGTCCTACCGGGCCGGGGCGGTGAGCCTGGCGTCGGCCTTCCT
CCTTGTCTCGTCGGGGGTGGTGGGGGAGGTGCTGGCCGCCTTCGGAAGCC
TGGCGCCCGAGGAGATCCAGGAGCTTGTTGGGCCAATAAGCGTGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10543:586..2282+

>mRNA_E-siliculosus-1a_F_contig10543.395.1 ID=mRNA_E-siliculosus-1a_F_contig10543.395.1|Name=mRNA_E-siliculosus-1a_F_contig10543.395.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2622bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10543:586..2282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGGCCAACCTACGGTGTACTACGTCACGATGGCGGGCCAACCTAC
GGTGTACTACGTCACGTACACGAACCCAGCAGACGCAGGAGGCGGATTCG
TCGGAGGCGGTGGCGGTAGCAGTATTGGAGCACCGCATGTGGGCTGGGCC
CGACAGCAAGCTCCTGAGCCTCCTCCTGCCTACCCATACCGGGGCCCGAC
CGCACATCCTCCTTCTGCCCCTCCCGCCCACCCCATCTCCAACGGCGCCC
GTCCTCCTCCTCCTGCCTACCCTGCTGTTACCCAGGGCGCAGCCGCAACC
GCGCCGCCTCACGGCGGGGCCCCCGCCCCGGCATACCCGGGCCTCAACGC
ACAGCACTGTGCCCCCTGTCCTCCTGCCTACCAGGCCGCAACCTCCACCA
CCGTCCCCGCCTACCCGGGCCTCAACGTCCAGCACAACGGCTACTTTCCT
GCCGCCCCCGGCGCGGACAGCAGCGACGACCCGAGCGGTAGCCGGCGAGG
TAAGAAGAAGAAGAAGGAGGAGGCCGCCACCGAGGTGGCGCACGAGTCGA
GGAAGTGGAAGTGGGCCATGTTTGTCCTGGGGAACCTGATCTCCTTGGCG
GTGGTCGCGTCGGAGATCGGGGAGCTGAACGTGTGCTTCGAGGAGAACCT
GGACGAGGAGGACGACGACACGCCGGAGCTGAACGCGTCCCGGGCGTACG
GGGGGCTCATGTTCACCCTGGTGCTCGGCCTCCTCGTGGACTTCATCTCC
GCCGTCCTGCTCTCCCTGGTGTACCGCTCCCCGCTGGACATCAAGTCCGC
CCACAAGATCCCGCCGGGGGACATGCGGCACTGCGGCGGCACGTGCCTTG
TGCATTTCGTGGCGCCGTTCTCCTGGGGGCTGGTCTTCTGGGCCGGCGGC
TTCGCGAGCTTGAAGTACGGGGGCAACGCCCCCTGCGGCGGCGGCACCGG
CGGCGACGGGCTGGAGTCCTACCTGAGGATTTCCGGCGCCCTGATGGCCG
TGTTCGGGACCGGGATGCTGGCCCTCTCGTTCGTCACGCTAATGTTCGCG
TGCTACTCGTCGTCGTTGTCGTCGTCGTCGAGCTCTTCTCGGCCGCCCGC
TGCCCGCCGGGGTTGCTGTTCCAGGGCGCGGGACGCGGTGCACAAGAAGT
TCATGTCCAAGAGCCCGATCTTCGACCTGGCCTGGCAGGTGCAGAGTGTT
GTCCTGTCCTACCGGGCCGGGGCGGTGAGCCTGGCGTCGGCCTTCCTCCT
TGTCTCGTCGGGGGTGGTGGGGGAGGTGCTGGCCGCCTTCGGAAGCCTGG
CGCCCGAGGAGATCCAGGAGCTTGTTGGGCCAATAAGCGTGTGATACACG
AACCCAGCAGACGCAGGAGGCGGATTCGTCGGAGGCGGTGGCGGTAGCAG
TATTGGAGCACCGCATGTGGGCTGGGCCCGACAGCAAGCTCCTGAGCCTC
CTCCTGCCTACCCATACCGGGGCCCGACCGCACATCCTCCTTCTGCCCCT
CCCGCCCACCCCATCTCCAACGGCGCCCGTCCTCCTCCTCCTGCCTACCC
TGCTGTTACCCAGGGCGCAGCCGCAACCGCGCCGCCTCACGGCGGGGCCC
CCGCCCCGGCATACCCGGGCCTCAACGCACAGCACTGTGCCCCCTGTCCT
CCTGCCTACCAGGCCGCAACCTCCACCACCGTCCCCGCCTACCCGGGCCT
CAACGTCCAGCACAACGGCTACTTTCCTGCCGCCCCCGGCGCGGACAGCA
GCGACGACCCGAGCGGTAGCCGGCGAGGTAAGAAGAAGAAGAAGGAGGAG
GCCGCCACCGAGGTGGCGCACGAGTCGAGGAAGTGGAAGTGGGCCATGTT
TGTCCTGGGGAACCTGATCTCCTTGGCGGTGGTCGCGTCGGAGATCGGGG
AGCTGAACGTGTGCTTCGAGGAGAACCTGGACGAGGAGGACGACGACACG
CCGGAGCTGAACGCGTCCCGGGCGTACGGGGGGCTCATGTTCACCCTGGT
GCTCGGCCTCCTCGTGGACTTCATCTCCGCCGTCCTGCTCTCCCTGGTGT
ACCGCTCCCCGCTGGACATCAAGTCCGCCCACAAGATCCCGCCGGGGGAC
ATGCGGCACTGCGGCGGCACGTGCCTTGTGCATTTCGTGGCGCCGTTCTC
CTGGGGGCTGGTCTTCTGGGCCGGCGGCTTCGCGAGCTTGAAGTACGGGG
GCAACGCCCCCTGCGGCGGCGGCACCGGCGGCGACGGGCTGGAGTCCTAC
CTGAGGATTTCCGGCGCCCTGATGGCCGTGTTCGGGACCGGGATGCTGGC
CCTCTCGTTCGTCACGCTAATGTTCGCGTGCTACTCGTCGTCGTTGTCGT
CGTCGTCGAGCTCTTCTCGGCCGCCCGCTGCCCGCCGGGGTTGCTGTTCC
AGGGCGCGGGACGCGGTGCACAAGAAGTTCATGTCCAAGAGCCCGATCTT
CGACCTGGCCTGGCAGGTGCAGAGTGTTGTCCTGTCCTACCGGGCCGGGG
CGGTGAGCCTGGCGTCGGCCTTCCTCCTTGTCTCGTCGGGGGTGGTGGGG
GAGGTGCTGGCCGCCTTCGGAAGCCTGGCGCCCGAGGAGATCCAGGAGCT
TGTTGGGCCAATAAGCGTGTGA
back to top