mRNA_E-siliculosus-1a_F_contig1054.392.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1054.392.1
Unique NamemRNA_E-siliculosus-1a_F_contig1054.392.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1054.392.1 vs. uniprot
Match: D8LLS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS8_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 1.570e-89
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 1 
Query:  301 MGSPRLAAPRSRASTVLALPLLAAALVLVCASLLPAGAVAMGPNDDGAANNLGLLAQACATSFCGLGVDALDLWLSLEEVCRTDASNQPSLEAGDEMEFGGVHAGGWGTAAAEGG-RGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA 774
            MGSPRLAAP+SRASTVLALPLLAAALVLVCASLLPAGA AMGPNDDGAANNLGLLAQACA+SFCGLGVDALDLWLSLEEVCRT ASNQPSLE G EMEFGGVH GGWGTAAAEGG RGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA
Sbjct:    1 MGSPRLAAPQSRASTVLALPLLAAALVLVCASLLPAGAEAMGPNDDGAANNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEMEFGGVHGGGWGTAAAEGGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1054.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLS8_ECTSI1.570e-8994.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1054contigE-siliculosus-1a_F_contig1054:14065..17778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size477
Model size1928
Exons2
Ec32 orthologEc-02_002710.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1054.392.1prot_E-siliculosus-1a_F_contig1054.392.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1054 14365..16627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9034731-UTR-E-siliculosus-1a_F_contig1054:14064..143641622927555.9034731-UTR-E-siliculosus-1a_F_contig1054:14064..14364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 14065..14364 +
1696318583.9311404-UTR-E-siliculosus-1a_F_contig1054:14064..143641696318583.9311404-UTR-E-siliculosus-1a_F_contig1054:14064..14364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 14065..14364 +
1622927555.9440353-UTR-E-siliculosus-1a_F_contig1054:16627..177781622927555.9440353-UTR-E-siliculosus-1a_F_contig1054:16627..17778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 16628..17778 +
1696318583.9555285-UTR-E-siliculosus-1a_F_contig1054:16627..177781696318583.9555285-UTR-E-siliculosus-1a_F_contig1054:16627..17778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 16628..17778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.9147067-CDS-E-siliculosus-1a_F_contig1054:14364..146011622927555.9147067-CDS-E-siliculosus-1a_F_contig1054:14364..14601Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 14365..14601 +
1696318583.9397087-CDS-E-siliculosus-1a_F_contig1054:14364..146011696318583.9397087-CDS-E-siliculosus-1a_F_contig1054:14364..14601Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 14365..14601 +
1622927555.9297812-CDS-E-siliculosus-1a_F_contig1054:16387..166271622927555.9297812-CDS-E-siliculosus-1a_F_contig1054:16387..16627Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 16388..16627 +
1696318583.9473639-CDS-E-siliculosus-1a_F_contig1054:16387..166271696318583.9473639-CDS-E-siliculosus-1a_F_contig1054:16387..16627Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 16388..16627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1054.392.1

>prot_E-siliculosus-1a_F_contig1054.392.1 ID=prot_E-siliculosus-1a_F_contig1054.392.1|Name=mRNA_E-siliculosus-1a_F_contig1054.392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=159bp
MGSPRLAAPRSRASTVLALPLLAAALVLVCASLLPAGAVAMGPNDDGAAN
NLGLLAQACATSFCGLGVDALDLWLSLEEVCRTDASNQPSLEAGDEMEFG
GVHAGGWGTAAAEGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTW
TKEGYPVA*
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mRNA from alignment at E-siliculosus-1a_F_contig1054:14065..17778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1054.392.1 ID=mRNA_E-siliculosus-1a_F_contig1054.392.1|Name=mRNA_E-siliculosus-1a_F_contig1054.392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:14065..17778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTACCTCAATCGCGAAGCCAACTAGACAGCCATCGAGACAAGCGCGTACC
GGCGCACATAGTAACCTTCTGCCGAGGAGGCATATAGCCTACTCTGCGGC
GTGTGGATCACGCGCGAAAGGAACGGCTGCTGGCTATACGTCGTGTTGTC
TGAATTTCGTGGAAAAGGCAACACTCCGCGTTGCACGGAAAAGGAAGGAT
CGATAAAAAAACGGCAAACGAAGCTCCAGTCACAAAACCACACTGGCAAG
GAGGAGAGCGGGAGAGGCACACCCCCACCGTCCTCCGTAAGCGCACAGCG
ATGGGGTCTCCGAGACTTGCGGCACCACGATCGAGAGCCAGCACCGTGCT
CGCATTGCCGCTGCTCGCAGCGGCGCTGGTGCTGGTGTGCGCCTCTCTTC
TGCCCGCCGGGGCGGTGGCCATGGGTCCGAATGACGACGGCGCCGCCAAC
AACCTGGGCCTCTTAGCGCAGGCCTGTGCGACCTCGTTTTGCGGGCTAGG
GGTGGACGCTCTGGACCTGTGGTTATCGCTGGAGGAGGTGAGAATCGGCC
CAGCGGGTGCGGGGTGTGTTACACTCGCAGTCACGACGCCCGGGCTAAAG
CCGTAGTCGTCACGTTTATCTAGTTTATCGTGTACAAGGGACTATGCAAT
GGTATGCAACTTCACGACTTTGCGGGGAAACCGCACCCACCATCTTCACA
CGCATCGACACACCCAGCGACCAGGCGACCCGTGTATGCCGGTCACGTTT
TTACTTTTGGGTGTGTTTTCTCTCGTTGGACACACGGGATCGACGTCGCA
AATGTTTTTTGCCACCCGCAGAAGTACGTACAATTGTGTTATTTTGCAAC
CGTAGATCGATGACGCAAGATATCACACCCCTAAGACATATTTGCAAAGC
TTGATCACTCACTCCGCAGCAGAAAGACTGGTGGTGCCGAAATTGGCGGC
GTTGAGAGCGCTTCTCGTCAAGAGCTTTCCGAGAGCGTGTCATATCGTCC
ATGCAGCGTCGTGATCGTGGAGTAATCAGGCTTTGAAAATCGACCATCTC
CGGTGGCAGTCTACGACCCGACCAGATTCCTGATTCCATCGCAAAAATAA
AAATGGATAATGTGCACAGAAAGAGAGGTGGAGCGAGGCGGTTCAACGGT
GATCCTATTGTCTGTCTGTGGGATGACAGGGAAGGCGGTTGAGGGAGGGA
TTCCGTGTTCGTCGTCCGCAGTTCATGTCCCATTTACCCAAGCCAGCAAG
CAGCCGTGTGCGTTTCGAAATATGAATGAAAGGGGACATGAGCATTGAAA
TCATGCGATCTTTTTGTTGATACGACAGCTCTGAGCTCTTTCGTTCGTCA
ACCGGTATGCATATGTGCCGTCGACACTAAAATAGTGACGGAAACACGAC
GCAACAAGGCCCGCCGCCGTAGATCACTGCTGCCTAGCTTTTCGGTGAAG
TAGTCGTCTTGGGTTCGCGTGTCACGGTCTTGTTGACTTCTCCAAGCAGG
GCTGTGTGGCCAGCAGCGGCAGTGTCGCGACGGGAGGTTTCGAAGCCCCA
GTAGACCACCTTATGAGTATTTTGTTTGGCCAAGCCAGTCGCCGGAATAC
ATGAAAATTCTGTGGCCCCGTGAACATTTGCCTTGCACGGAAAGTGTATC
TGCCTTGTCAGCTTTGTCATACACGTACGAAAGATGCCTAGTACTGTGCT
AAAATGTAGAAAGCGTTGTGTATGTTATTCGTGGAAGCGACTGCCTTTCA
CCCTCCTTGCCTCCGCGGAGCGCTGTCGATCCCGACCACCCCGTCCACGG
GCAACGGCAACGCCTCTGGCACTCGAGAAACCTCTTGGACATATATCAAA
AAGATGGTATGCAACTAACTTGGTTGAGCACAGACTACTTTCTCTGCGGC
AAAGCACGTCCGTCTGGCTTTCTCTGTCGTGCCTTGAGAGGCGGTCTGTA
CCGTTTTCCGGGTGGTACGCACAGGCGGAAGGAGGGCTACACTCCGTCGA
GGAAGGGACCGGAGCATTTGGGGCAAACGCTTTGCACCCTATCCTGTTGG
CACGTAGGCGGCGCTCGCGCCTTGCTGCTACATGCCGAAAACTTTTCTTT
TCTGTGCTGAGGTTTCCTGTTGCTCGCCAACATGAGAAGAGGAAACAACT
TACAACAGCAGTAGACACGGGTCTGCCAACCAGCAGTTAGGCCGCATGAC
TCAACAACCATCTTGGGAAGGAAGAGACACACGACGCTGACCCCCCCCCC
CCTCTCTCTCTCGTTCGATGCTGCACGACTCGCCCACATGGCGTGCTGCT
GCCGGCACCCACACCCAAAACAGGTTTGCCGCACCGACGCCTCGAACCAA
CCCTCCCTGGAAGCCGGCGACGAGATGGAGTTTGGGGGTGTCCATGCCGG
CGGGTGGGGCACGGCGGCGGCCGAAGGCGGCCGCGGCGGCGACTGGTCTG
CGAGCTCGACCGCGCTGGTGTGCGGCGGGGTGTTGGCGGTGTCGGCGCTC
GTGGGCTTCCGGTCCGGGATCAAGGTCGGCACGTGGACGAAGGAGGGCTA
CCCGGTCGCGTAGCGGCAGCGGTAGCGGTAGCGGCGACGACGGAAGTTGC
GCCGCACCGCTGTTGTGTTTTTTTTTCATATTTTTTGGGAGGACATGGAA
ATATGGGGTATATATTTTGGTTTTGAAATCGAGGCAAGAGAGGCTGGGGG
GAGAGGGGGGCCCGGGAAGAGCGGAATTTTTTTGAGACGACGACGAGAAG
AAGCCAGATCGTCACCGCCGGGCGAGTTTTTTTTTCCCACCGAAACGCCG
CCTTTTTTTTCTAGCGTACGCGCACGCACCGGCGAACATGCAGGAATCAG
CTTCACTTTTTTTTGTATTGTTAGTGAGCGTGGGGGGCGGAGGAGGCGAC
TTTGTCTTGGGCGGCATGCATGCCGTGTTTCGTCGCTGTCTCTATGTATC
TACACACGTTTATCTTGAGAGCTGTGTTGCAGTGTGGTTGTGTGGCTCTC
TCCCGATCCTGGAGAGCATGGGAAGGGAAGGAGCGTTAGGGCTGAATGAC
GCCGGAGGCCTAAGGCCATTGGGATCGTTCGCACATTATCCGGTTTATGG
GATCCCCGTTTGGTCCCTGCAATTATCGCTCATGTGTATGTGTTCGAAGA
GGTTATTCCTTGTGTGTTTCATACCGTTGTCTGTGTGGGTGGGGTGTGTT
GGCGAGAGGGGGCAGCGTTTTTGTCTACTCTCGCTTGACTTGTCCAAGAG
AAAAGAGGGTTGGTACAGGTTTTTGTTTCCACAAGGGCGGTATACGACGT
ATTGAGAAGGCAGGGAAGGAAGTTTTGTTTCCGTTTTCCACACTGCTTGC
ACATCGTTTTCGTTTTTTTATGTGTCATGTGTTGGTTTTGGTGTTGGTGC
TGCTGTGTATGTTGATGTTCAACGTTAAAACGTTTATTGTGTGCAGCTGT
TGGCAAGATTGAGTTATTACTTGTAGTTTGCATCTGTATCTTATTATGCT
GTTTCTTTTTTGAAAGAGAGCAAGCAGCACGGAGTAATGAGTGTTCAGAA
CGAACAGACAGGAGGGGGCTATTCGCACTTCAGTGAATTCGTGCGTGAAT
ACAATGGACAAGAGAGATGGATGCACGAGGATGGATGCACGAGGAGAGAG
CCGCAGAAAATCGTTTGCAACGTTTTTTTTTAATTGTGGTGGAGACAACA
ACAACAACGTCCAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1054:14065..17778+

>mRNA_E-siliculosus-1a_F_contig1054.392.1 ID=mRNA_E-siliculosus-1a_F_contig1054.392.1|Name=mRNA_E-siliculosus-1a_F_contig1054.392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:14065..17778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCTCCGAGACTTGCGGCACCACGATCGAGAGCCAGCACCGTGCT
CGCATTGCCGCTGCTCGCAGCGGCGCTGGTGCTGGTGTGCGCCTCTCTTC
TGCCCGCCGGGGCGGTGGCCATGGGTCCGAATGACGACGGCGCCGCCAAC
AACCTGGGCCTCTTAGCGCAGGCCTGTGCGACCTCGTTTTGCGGGCTAGG
GGTGGACGCTCTGGACCTGTGGTTATCGCTGGAGGAGATGGGGTCTCCGA
GACTTGCGGCACCACGATCGAGAGCCAGCACCGTGCTCGCATTGCCGCTG
CTCGCAGCGGCGCTGGTGCTGGTGTGCGCCTCTCTTCTGCCCGCCGGGGC
GGTGGCCATGGGTCCGAATGACGACGGCGCCGCCAACAACCTGGGCCTCT
TAGCGCAGGCCTGTGCGACCTCGTTTTGCGGGCTAGGGGTGGACGCTCTG
GACCTGTGGTTATCGCTGGAGGAGGTTTGCCGCACCGACGCCTCGAACCA
ACCCTCCCTGGAAGCCGGCGACGAGATGGAGTTTGGGGGTGTCCATGCCG
GCGGGTGGGGCACGGCGGCGGCCGAAGGCGGCCGCGGCGGCGACTGGTCT
GCGAGCTCGACCGCGCTGGTGTGCGGCGGGGTGTTGGCGGTGTCGGCGCT
CGTGGGCTTCCGGTCCGGGATCAAGGTCGGCACGTGGACGAAGGAGGGCT
ACCCGGTCGCGTAGGTTTGCCGCACCGACGCCTCGAACCAACCCTCCCTG
GAAGCCGGCGACGAGATGGAGTTTGGGGGTGTCCATGCCGGCGGGTGGGG
CACGGCGGCGGCCGAAGGCGGCCGCGGCGGCGACTGGTCTGCGAGCTCGA
CCGCGCTGGTGTGCGGCGGGGTGTTGGCGGTGTCGGCGCTCGTGGGCTTC
CGGTCCGGGATCAAGGTCGGCACGTGGACGAAGGAGGGCTACCCGGTCGC
GTAG
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