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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.480e-53 Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = 3 Query: 6 GRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSRSYQRGTYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
GRL AEGDGSRRSR AAATAGG APGVQRSAASSRMATARGGGSRSYQRG AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 33 GRLAAEGDGSRRSRXXXXXXXXXXXXXXXXXFAAATAGGTAPGVQRSAASSRMATARGGGSRSYQRGI-RLAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 157
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.270e-37 Identity = 112/275 (40.73%), Postives = 115/275 (41.82%), Query Frame = 3 Query: 3 GGRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSR------------------SYQRG----------------------------------------------------------------------------------------------------------------------------------TYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
GGRLGAEGDGSRRSR SPVPGSR QRPA SPSAA TAGG APGVQR AASSRMA ARGGGS S RG YTFAALVLFLFTEP+RP+TKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 261 GGRLGAEGDGSRRSRPPSPVPGSRLQRPAPSPSAAVTAGGTAPGVQRLAASSRMAAARGGGSAEGEPSSVAVRAADGEVSASASRGGVAGADESWVREAPAAGETNAHGQGASGSVVTPRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 535
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI) HSP 1 Score: 121 bits (303), Expect = 3.550e-33 Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3 Query: 210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 55 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 112
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYS 362
YT+A V+FLFT+P+R K + ELLL+DFW GLPV+S HTN+ MAAIY+
Sbjct: 48 YTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 384 |
| Model size | 387 |
| Exons | 3 |
| Ec32 ortholog | Ec-04_004880.2 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10536.388.1 >prot_E-siliculosus-1a_F_contig10536.388.1 ID=prot_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
RAGDWAPKATAAGDRGPPPPCPAQDVSGPRPRRPPPQPRVARRREFNARR
RLRGWPLHEAAAADRTSEVRIRLRRWCCSFSRSLSVPRRRISPSSCWKTF
GKACLSSPGRTQTCAWRRSIAGMTQDGW back to topmRNA from alignment at E-siliculosus-1a_F_contig10536:277..2248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGCGGGAGATTGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCC
ACCTCCCCCGTGCCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTC
CGCCGCCGCAACCGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGG
CGTCTTCGAGGATGGCCACTGCACGAGGCGGCGGCAGCGTGGAGGGGGAG
CGGTCGCCTAACGCGGTGCGGGCCGCAGATGGAGAGGTGTCAGCGTCCGC
AAGCCGTGGTGTTGTTGCCGGTGCCGATGAGTCACGGGCCCGGGAGGCGC
CTGCGGCGTGGGAGAGAAACGCGCATGGCCAAGGAGCTTCGGGCTCGGTG
GTAACCCCCCGGACCGGGGGCGAGGCGGAGATGGCGGTGTCGGGGAAGTC
GTCTGGGGGACCCGCCGCCGCTGCTTCGCAAGGCCTGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAACAGGAGGGCGGGATAATTAGCCGCGTGAAGGGC
ATGCAGGACCGCGCGGGACGAACTCAGGTGCGTAGGTGACGCAAGATATC
ACCCCCCCCCCTGGATCGATTTTCACAGCTCTACGACGAAAATGATGTAT
TATTCGAGCGATACGCTTTTCGGAGAAGAGGCGGTTCCGACGCCTCTGTT
TGTCGGCATCGCCACCCTTTCTGCTGGAGAGAAATGGAGCTTTGAAAATC
ATCCCAGGGGGTCTGGTATCTTGTGCTACTTACGCCATAATCTCCTGGGG
AAGCCTTGGTTTTTCTTACTGTTCGAGAGTAACAGAAAACCGTCAGGGGG
GGGGAGTCATGTGGAAGGTGTGGTGAATGTCTTGAATGGAAAATGCCCCT
GTCAGTTTATTTTTGTGAGTGTTGATGTTAGAGTGGAAACGGTTCCAATG
CCGATCAGTACCAACCATGGGATGCGACACAAGACGCCCGGCTGATACCT
AACGATTCGGCTTCTTATATATTTTCGTAGCGTTGTGCGAGGTCTGGGCG
TCACGCAGACCAAAGGGGGAAGTGATAGTATAGTAGTGGCAACAACACAT
ACAGTACACCGTCTGTGATTTCGGAAGCTCGAAGAGGTTGATGTGCCCCC
TCACCCGCCACCCCCATCAACCTTCGTATTTTTTCGAGCACGCTTTTCAA
GGTGTTCGCTGCCCGCCGCGGCACCGCCCATGTCTCGACCTCGCTACAAC
CGCGGCTGAAATCCCACCTTCTCCACGCCAACTGAACCTCCAGGCGAAGC
TTCACACCTACAACGCTGTGCTGCTCAGGGTGAAGAGTCTTCACGCCTGG
AGCGACCCTGGACGGACGAAAGTCTGGGCGGCCGCTGTCTCGCTTCTCGC
GGCTGTGCTAGCGATCGTACCAGCGAGGTACGTGCGCTTCAGTTTCGTTG
TTGGGGTACCATTAATAGTTGGAACAGATCAGCAGTATTTCTGCGTGCAG
GAAGAAAGATAAAAATATCCTGCAGCATCAAGCTCGATGATCATGGCCGC
GGTATTTGAGGCAACTCCTGTTGTTGGTATCATTTGGTTGTTGTTTTTCG
CGTTTCGGCGCACTTGTAGTGCTCCGTCTTTCATTTCCTTCCTAGCCTCC
ATTTTCATTCCCGAAGTCCTAAACTCACTGTACCTGTTCGGTCAGTTGCC
TGACGTTGCCGTTGTGCGGCTTGGTACTTGAGGAGAGATTCGAAAGACTG
GTGCCGTGTATCACTCCAGCAGCGACGTCTATTCAATCAATCGAACCGAA
TGTGGCTAGCAAGACCCTGATCAGAACGCGACCCCCCCCCCCAGGTATAC
GTTTGCGGCGTTGGTGTTGTTCCTTTTCACGGAGCCTGTCCGTCCCAAGA
CGAAGAATATCGCCGAGCTCCTGCTGGAAGACTTTTGGGAAGGCTTGCCT
GTCGAGTCCGGGACGCACACAAACGTGCGCATGGCGGCGATCTATAGCCG
GTATGACTCAAGATGGATGGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10536:277..2248- >mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGCGGGAGATTGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCC
ACCTCCCCCGTGCCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTC
CGCCGCCGCAACCGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGG
CGTCTTCGAGGATGGCCACTGCACGAGGCGGCGGCAGCCGGGCGGGAGAT
TGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCCACCTCCCCCGTG
CCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTCCGCCGCCGCAAC
CGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGGCGTCTTCGAGGA
TGGCCACTGCACGAGGCGGCGGCAGCCGATCGTACCAGCGAGGTACCGAT
CGTACCAGCGAGGTACGTATACGTTTGCGGCGTTGGTGTTGTTCCTTTTC
ACGGAGCCTGTCCGTCCCAAGACGAAGAATATCGCCGAGCTCCTGCTGGA
AGACTTTTGGGAAGGCTTGCCTGTCGAGTCCGGGACGCACACAAACGTGC
GCATGGCGGCGATCTATAGCCGGTATGACTCAAGATGGATGGGTATACGT
TTGCGGCGTTGGTGTTGTTCCTTTTCACGGAGCCTGTCCGTCCCAAGACG
AAGAATATCGCCGAGCTCCTGCTGGAAGACTTTTGGGAAGGCTTGCCTGT
CGAGTCCGGGACGCACACAAACGTGCGCATGGCGGCGATCTATAGCCGGT
ATGACTCAAGATGGATGG back to top
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