mRNA_E-siliculosus-1a_F_contig10536.388.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.480e-53 Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = 3 Query: 6 GRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSRSYQRGTYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
GRL AEGDGSRRSR AAATAGG APGVQRSAASSRMATARGGGSRSYQRG AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 33 GRLAAEGDGSRRSRXXXXXXXXXXXXXXXXXFAAATAGGTAPGVQRSAASSRMATARGGGSRSYQRGI-RLAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 157
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.270e-37 Identity = 112/275 (40.73%), Postives = 115/275 (41.82%), Query Frame = 3 Query: 3 GGRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSR------------------SYQRG----------------------------------------------------------------------------------------------------------------------------------TYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
GGRLGAEGDGSRRSR SPVPGSR QRPA SPSAA TAGG APGVQR AASSRMA ARGGGS S RG YTFAALVLFLFTEP+RP+TKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 261 GGRLGAEGDGSRRSRPPSPVPGSRLQRPAPSPSAAVTAGGTAPGVQRLAASSRMAAARGGGSAEGEPSSVAVRAADGEVSASASRGGVAGADESWVREAPAAGETNAHGQGASGSVVTPRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 535
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI) HSP 1 Score: 121 bits (303), Expect = 3.550e-33 Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3 Query: 210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct: 55 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 112
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 Query: 210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYS 362
YT+A V+FLFT+P+R K + ELLL+DFW GLPV+S HTN+ MAAIY+
Sbjct: 48 YTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10536.388.1 >prot_E-siliculosus-1a_F_contig10536.388.1 ID=prot_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp RAGDWAPKATAAGDRGPPPPCPAQDVSGPRPRRPPPQPRVARRREFNARRback to top mRNA from alignment at E-siliculosus-1a_F_contig10536:277..2248- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10536:277..2248- >mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |