mRNA_E-siliculosus-1a_F_contig10536.388.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10536.388.1
Unique NamemRNA_E-siliculosus-1a_F_contig10536.388.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.480e-53
Identity = 101/126 (80.16%), Postives = 102/126 (80.95%), Query Frame = 3 
Query:    6 GRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSRSYQRGTYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
            GRL AEGDGSRRSR                  AAATAGG APGVQRSAASSRMATARGGGSRSYQRG    AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct:   33 GRLAAEGDGSRRSRXXXXXXXXXXXXXXXXXFAAATAGGTAPGVQRSAASSRMATARGGGSRSYQRGI-RLAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 157
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BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.270e-37
Identity = 112/275 (40.73%), Postives = 115/275 (41.82%), Query Frame = 3 
Query:    3 GGRLGAEGDGSRRSRSTSPVPGSRRQRPASSPSAAATAGGKAPGVQRSAASSRMATARGGGSR------------------SYQRG----------------------------------------------------------------------------------------------------------------------------------TYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
            GGRLGAEGDGSRRSR  SPVPGSR QRPA SPSAA TAGG APGVQR AASSRMA ARGGGS                   S  RG                                                                                                                                   YTFAALVLFLFTEP+RP+TKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct:  261 GGRLGAEGDGSRRSRPPSPVPGSRLQRPAPSPSAAVTAGGTAPGVQRLAASSRMAAARGGGSAEGEPSSVAVRAADGEVSASASRGGVAGADESWVREAPAAGETNAHGQGASGSVVTPRAWGEAEMSRAGKSSGGPAXXXXXXXXXXXXXXXXGGIISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 535
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BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.550e-33
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3 
Query:  210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRYDSRWM 383
            YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSR+DSRWM
Sbjct:   55 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYSRHDSRWM 112
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BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  210 YTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIYS 362
            YT+A  V+FLFT+P+R   K + ELLL+DFW GLPV+S  HTN+ MAAIY+
Sbjct:   48 YTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYT 98
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10536.388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLQ4_ECTSI1.480e-5380.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L705_9PHAE1.270e-3740.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ6_ECTSI3.550e-3398.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWJ6_9STRA1.220e-1360.78PRT_C domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10536contigE-siliculosus-1a_F_contig10536:277..2248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size384
Model size387
Exons3
Ec32 orthologEc-04_004880.2
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10536.388.1prot_E-siliculosus-1a_F_contig10536.388.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10536 279..2248 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.43078-CDS-E-siliculosus-1a_F_contig10536:278..4541622927555.43078-CDS-E-siliculosus-1a_F_contig10536:278..454Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 279..454 -
1696318583.7280133-CDS-E-siliculosus-1a_F_contig10536:278..4541696318583.7280133-CDS-E-siliculosus-1a_F_contig10536:278..454Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 279..454 -
1622927555.4444501-CDS-E-siliculosus-1a_F_contig10536:867..8871622927555.4444501-CDS-E-siliculosus-1a_F_contig10536:867..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 868..887 -
1696318583.7373197-CDS-E-siliculosus-1a_F_contig10536:867..8871696318583.7373197-CDS-E-siliculosus-1a_F_contig10536:867..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 868..887 -
1622927555.4609995-CDS-E-siliculosus-1a_F_contig10536:2060..22481622927555.4609995-CDS-E-siliculosus-1a_F_contig10536:2060..2248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 2061..2248 -
1696318583.7472742-CDS-E-siliculosus-1a_F_contig10536:2060..22481696318583.7472742-CDS-E-siliculosus-1a_F_contig10536:2060..2248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10536 2061..2248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10536.388.1

>prot_E-siliculosus-1a_F_contig10536.388.1 ID=prot_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp
RAGDWAPKATAAGDRGPPPPCPAQDVSGPRPRRPPPQPRVARRREFNARR
RLRGWPLHEAAAADRTSEVRIRLRRWCCSFSRSLSVPRRRISPSSCWKTF
GKACLSSPGRTQTCAWRRSIAGMTQDGW
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mRNA from alignment at E-siliculosus-1a_F_contig10536:277..2248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGCGGGAGATTGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCC
ACCTCCCCCGTGCCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTC
CGCCGCCGCAACCGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGG
CGTCTTCGAGGATGGCCACTGCACGAGGCGGCGGCAGCGTGGAGGGGGAG
CGGTCGCCTAACGCGGTGCGGGCCGCAGATGGAGAGGTGTCAGCGTCCGC
AAGCCGTGGTGTTGTTGCCGGTGCCGATGAGTCACGGGCCCGGGAGGCGC
CTGCGGCGTGGGAGAGAAACGCGCATGGCCAAGGAGCTTCGGGCTCGGTG
GTAACCCCCCGGACCGGGGGCGAGGCGGAGATGGCGGTGTCGGGGAAGTC
GTCTGGGGGACCCGCCGCCGCTGCTTCGCAAGGCCTGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAACAGGAGGGCGGGATAATTAGCCGCGTGAAGGGC
ATGCAGGACCGCGCGGGACGAACTCAGGTGCGTAGGTGACGCAAGATATC
ACCCCCCCCCCTGGATCGATTTTCACAGCTCTACGACGAAAATGATGTAT
TATTCGAGCGATACGCTTTTCGGAGAAGAGGCGGTTCCGACGCCTCTGTT
TGTCGGCATCGCCACCCTTTCTGCTGGAGAGAAATGGAGCTTTGAAAATC
ATCCCAGGGGGTCTGGTATCTTGTGCTACTTACGCCATAATCTCCTGGGG
AAGCCTTGGTTTTTCTTACTGTTCGAGAGTAACAGAAAACCGTCAGGGGG
GGGGAGTCATGTGGAAGGTGTGGTGAATGTCTTGAATGGAAAATGCCCCT
GTCAGTTTATTTTTGTGAGTGTTGATGTTAGAGTGGAAACGGTTCCAATG
CCGATCAGTACCAACCATGGGATGCGACACAAGACGCCCGGCTGATACCT
AACGATTCGGCTTCTTATATATTTTCGTAGCGTTGTGCGAGGTCTGGGCG
TCACGCAGACCAAAGGGGGAAGTGATAGTATAGTAGTGGCAACAACACAT
ACAGTACACCGTCTGTGATTTCGGAAGCTCGAAGAGGTTGATGTGCCCCC
TCACCCGCCACCCCCATCAACCTTCGTATTTTTTCGAGCACGCTTTTCAA
GGTGTTCGCTGCCCGCCGCGGCACCGCCCATGTCTCGACCTCGCTACAAC
CGCGGCTGAAATCCCACCTTCTCCACGCCAACTGAACCTCCAGGCGAAGC
TTCACACCTACAACGCTGTGCTGCTCAGGGTGAAGAGTCTTCACGCCTGG
AGCGACCCTGGACGGACGAAAGTCTGGGCGGCCGCTGTCTCGCTTCTCGC
GGCTGTGCTAGCGATCGTACCAGCGAGGTACGTGCGCTTCAGTTTCGTTG
TTGGGGTACCATTAATAGTTGGAACAGATCAGCAGTATTTCTGCGTGCAG
GAAGAAAGATAAAAATATCCTGCAGCATCAAGCTCGATGATCATGGCCGC
GGTATTTGAGGCAACTCCTGTTGTTGGTATCATTTGGTTGTTGTTTTTCG
CGTTTCGGCGCACTTGTAGTGCTCCGTCTTTCATTTCCTTCCTAGCCTCC
ATTTTCATTCCCGAAGTCCTAAACTCACTGTACCTGTTCGGTCAGTTGCC
TGACGTTGCCGTTGTGCGGCTTGGTACTTGAGGAGAGATTCGAAAGACTG
GTGCCGTGTATCACTCCAGCAGCGACGTCTATTCAATCAATCGAACCGAA
TGTGGCTAGCAAGACCCTGATCAGAACGCGACCCCCCCCCCCAGGTATAC
GTTTGCGGCGTTGGTGTTGTTCCTTTTCACGGAGCCTGTCCGTCCCAAGA
CGAAGAATATCGCCGAGCTCCTGCTGGAAGACTTTTGGGAAGGCTTGCCT
GTCGAGTCCGGGACGCACACAAACGTGCGCATGGCGGCGATCTATAGCCG
GTATGACTCAAGATGGATGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10536:277..2248-

>mRNA_E-siliculosus-1a_F_contig10536.388.1 ID=mRNA_E-siliculosus-1a_F_contig10536.388.1|Name=mRNA_E-siliculosus-1a_F_contig10536.388.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10536:277..2248- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGCGGGAGATTGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCC
ACCTCCCCCGTGCCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTC
CGCCGCCGCAACCGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGG
CGTCTTCGAGGATGGCCACTGCACGAGGCGGCGGCAGCCGGGCGGGAGAT
TGGGCGCCGAAGGCGACGGCAGCCGGCGATCGAGGTCCACCTCCCCCGTG
CCCGGCTCAAGACGTCAGCGGCCCGCGTCCTCGCCGTCCGCCGCCGCAAC
CGCGGGTGGCAAGGCGCCGGGAGTTCAACGCTCGGCGGCGTCTTCGAGGA
TGGCCACTGCACGAGGCGGCGGCAGCCGATCGTACCAGCGAGGTACCGAT
CGTACCAGCGAGGTACGTATACGTTTGCGGCGTTGGTGTTGTTCCTTTTC
ACGGAGCCTGTCCGTCCCAAGACGAAGAATATCGCCGAGCTCCTGCTGGA
AGACTTTTGGGAAGGCTTGCCTGTCGAGTCCGGGACGCACACAAACGTGC
GCATGGCGGCGATCTATAGCCGGTATGACTCAAGATGGATGGGTATACGT
TTGCGGCGTTGGTGTTGTTCCTTTTCACGGAGCCTGTCCGTCCCAAGACG
AAGAATATCGCCGAGCTCCTGCTGGAAGACTTTTGGGAAGGCTTGCCTGT
CGAGTCCGGGACGCACACAAACGTGCGCATGGCGGCGATCTATAGCCGGT
ATGACTCAAGATGGATGG
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