prot_E-siliculosus-1a_F_contig10535.387.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10535.387.1
Unique Nameprot_E-siliculosus-1a_F_contig10535.387.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length49
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.160e-26
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0
Query:    4 QVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 49
            +VRRCGEC PCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV
Sbjct:  484 KVRRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 529          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A7S2WD19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD19_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.420e-11
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query:    7 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 49
            RCGEC  CR+ +CG CR+C+DMP  GG G+ KQ CE R+C  V
Sbjct:   82 RCGECAGCRAQNCGDCRFCLDMPIFGGPGNLKQGCERRQCMAV 124          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A482WLS7_LAOST (Uncharacterized protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WLS7_LAOST)

HSP 1 Score: 55.8 bits (133), Expect = 8.930e-8
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 0
Query:    7 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            RC  C  C  +DCG+C YC+DMPK GG G  KQ C  R C
Sbjct:  485 RCRTCEACMRSDCGECLYCLDMPKFGGPGKAKQTCMLRNC 524          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: UPI00193D4D69 (jmjC domain-containing histone demethylation protein 1-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193D4D69)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 0
Query:    7 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            RC  C  C+  DCG+C YC+DMPK GG G  KQ C  R C
Sbjct:  482 RCRNCEACQHFDCGECIYCLDMPKFGGPGKAKQTCVKRNC 521          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: R1G1Q6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G1Q6_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 2.280e-7
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    7 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            RCGEC  C + +C   R+C+DMPK GG G+ +QPC  R+C
Sbjct:  502 RCGECEACVAPNCXXXRFCLDMPKFGGVGTLRQPCLQRRC 541          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: K0RWQ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWQ5_THAOC)

HSP 1 Score: 54.7 bits (130), Expect = 2.290e-7
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    7 RCGECVPCR-SADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 49
            +CG+C  C+ + DCGQC++C+D PK GG+   +Q C  RKC ++
Sbjct:  745 KCGDCTACKITFDCGQCQFCLDKPKFGGKNRLRQTCIKRKCPFM 788          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 20/39 (51.28%), Postives = 24/39 (61.54%), Query Frame = 0
Query:    8 CGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            C  C  C S DCG C YC DMP+ GG G  + PC+ R+C
Sbjct:  506 CKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQC 544          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: UPI0015D0BA8D (methyl-CpG-binding domain protein 1a isoform X1 n=3 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D0BA8D)

HSP 1 Score: 51.6 bits (122), Expect = 2.800e-6
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0
Query:    6 RRCGECVPC-RSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            R CG+C  C +  DCG+C +C+D PK GGR   +Q C  R+C
Sbjct:  451 RMCGQCKACLQDNDCGECDFCMDKPKFGGRNKKRQKCRMRQC 492          
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: T1J3M7_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J3M7_STRMM)

HSP 1 Score: 51.2 bits (121), Expect = 3.840e-6
Identity = 23/45 (51.11%), Postives = 26/45 (57.78%), Query Frame = 0
Query:    2 SNQVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 46
            S +  RC  C  C   DCG+C +CVDM K GGR   KQ C  RKC
Sbjct:  605 SKRKIRCKTCSACTRQDCGECIFCVDMRKFGGRQVLKQCCMYRKC 649          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LN86_ECTSI3.160e-2695.65Similar to DNA (Cytosine-5-)-methyltransferase (Pa... [more]
A0A7S2WD19_9STRA3.420e-1158.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482WLS7_LAOST8.930e-855.00Uncharacterized protein n=1 Tax=Laodelphax striate... [more]
UPI00193D4D691.220e-755.00jmjC domain-containing histone demethylation prote... [more]
R1G1Q6_EMIHU2.280e-752.50Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
K0RWQ5_THAOC2.290e-745.45Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A553P9S0_TIGCA1.090e-651.28Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI0015D0BA8D2.800e-647.62methyl-CpG-binding domain protein 1a isoform X1 n=... [more]
T1J3M7_STRMM3.840e-651.11Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 4..46
e-value: 4.6E-13
score: 49.0
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 1..47
score: 12.055

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10535contigE-siliculosus-1a_F_contig10535:129..275 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10535.387.1mRNA_E-siliculosus-1a_F_contig10535.387.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10535 129..275 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10535.387.1 ID=prot_E-siliculosus-1a_F_contig10535.387.1|Name=mRNA_E-siliculosus-1a_F_contig10535.387.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=49bp
LSNQVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002857Znf_CXXC