mRNA_E-siliculosus-1a_F_contig10535.387.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.160e-26 Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 Query: 10 QVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 147
+VRRCGEC PCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV
Sbjct: 484 KVRRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 529
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A7S2WD19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD19_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.420e-11 Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 Query: 19 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 147
RCGEC CR+ +CG CR+C+DMP GG G+ KQ CE R+C V
Sbjct: 82 RCGECAGCRAQNCGDCRFCLDMPIFGGPGNLKQGCERRQCMAV 124
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A482WLS7_LAOST (Uncharacterized protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WLS7_LAOST) HSP 1 Score: 55.8 bits (133), Expect = 8.930e-8 Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 1 Query: 19 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 138
RC C C +DCG+C YC+DMPK GG G KQ C R C
Sbjct: 485 RCRTCEACMRSDCGECLYCLDMPKFGGPGKAKQTCMLRNC 524
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: UPI00193D4D69 (jmjC domain-containing histone demethylation protein 1-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193D4D69) HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7 Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 1 Query: 19 RCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 138
RC C C+ DCG+C YC+DMPK GG G KQ C R C
Sbjct: 482 RCRNCEACQHFDCGECIYCLDMPKFGGPGKAKQTCVKRNC 521
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: K0RWQ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWQ5_THAOC) HSP 1 Score: 54.7 bits (130), Expect = 2.290e-7 Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 19 RCGECVPCR-SADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWV 147
+CG+C C+ + DCGQC++C+D PK GG+ +Q C RKC ++
Sbjct: 745 KCGDCTACKITFDCGQCQFCLDKPKFGGKNRLRQTCIKRKCPFM 788
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA) HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6 Identity = 20/39 (51.28%), Postives = 24/39 (61.54%), Query Frame = 1 Query: 22 CGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 138
C C C S DCG C YC DMP+ GG G + PC+ R+C
Sbjct: 506 CKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQC 544
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: UPI0015D0BA8D (methyl-CpG-binding domain protein 1a isoform X1 n=3 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D0BA8D) HSP 1 Score: 51.6 bits (122), Expect = 2.800e-6 Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 1 Query: 16 RRCGECVPC-RSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 138
R CG+C C + DCG+C +C+D PK GGR +Q C R+C
Sbjct: 451 RMCGQCKACLQDNDCGECDFCMDKPKFGGRNKKRQKCRMRQC 492
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Match: T1J3M7_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J3M7_STRMM) HSP 1 Score: 51.2 bits (121), Expect = 3.840e-6 Identity = 23/45 (51.11%), Postives = 26/45 (57.78%), Query Frame = 1 Query: 4 SNQVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKC 138
S + RC C C DCG+C +CVDM K GGR KQ C RKC
Sbjct: 605 SKRKIRCKTCSACTRQDCGECIFCVDMRKFGGRQVLKQCCMYRKC 649 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10535.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10535.387.1 >prot_E-siliculosus-1a_F_contig10535.387.1 ID=prot_E-siliculosus-1a_F_contig10535.387.1|Name=mRNA_E-siliculosus-1a_F_contig10535.387.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=49bp LSNQVRRCGECVPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWVback to top mRNA from alignment at E-siliculosus-1a_F_contig10535:129..275- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10535.387.1 ID=mRNA_E-siliculosus-1a_F_contig10535.387.1|Name=mRNA_E-siliculosus-1a_F_contig10535.387.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10535:129..275- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10535:129..275- >mRNA_E-siliculosus-1a_F_contig10535.387.1 ID=mRNA_E-siliculosus-1a_F_contig10535.387.1|Name=mRNA_E-siliculosus-1a_F_contig10535.387.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10535:129..275- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |