mRNA_E-siliculosus-1a_F_contig1053.383.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: D8LRF8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI) HSP 1 Score: 355 bits (910), Expect = 4.520e-115 Identity = 225/237 (94.94%), Postives = 230/237 (97.05%), Query Frame = 1 Query: 175 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAGDGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRASLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNSGWDDFDVGVGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAG 885
MTVSTAAQLATLVESTNCSDGAFVVSWQGALTL EPVVVGNSTTLSIEG GDG+VLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGE VSLLVSSCNFTANRA LDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNS WD+FDVGVGGAVGLSGGTPQLAFHECELRHNNAT GGAVYSD+GAS+T+NSTLLDGNWAG
Sbjct: 1 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLSEPVVVGNSTTLSIEGVGDGSVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEHVSLLVSSCNFTANRAPLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNSAWDNFDVGVGGAVGLSGGTPQLAFHECELRHNNATSYGGAVYSDAGASVTMNSTLLDGNWAG 237
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A6H5JWU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU3_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.700e-64 Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 1 Query: 175 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAGDGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRASLD 528
M VSTAAQLATLVE+TNCS+GAFVVSWQGALTL EPV+VGNSTTLS+EG GDGAVLDGGGGSRLFQVSGGASLFL+NLELRN SAPYY+GGGAIYADGEDVSLLVSSCNFT NRA LD
Sbjct: 1 MNVSTAAQLATLVENTNCSNGAFVVSWQGALTLSEPVLVGNSTTLSVEGVGDGAVLDGGGGSRLFQVSGGASLFLENLELRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPLD 118
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 6.840e-42 Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 1 Query: 643 AVTARKTLFLANVAEGPNSGWDDFDVGVGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYG 894
AVTA+KTLFL+NVAEGPNSGWDDFDVGVGGAVGLSGGTPQ+AFHECELR NNATD+GGAVYSDSGASITV STLLDGNWAGGYG
Sbjct: 7 AVTAQKTLFLSNVAEGPNSGWDDFDVGVGGAVGLSGGTPQVAFHECELRRNNATDNGGAVYSDSGASITVTSTLLDGNWAGGYG 90
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A836CF41_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF41_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.890e-9 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 208 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPY--YNGGGAIYADGEDVSLLVSSCNFTANR 516
L E+T C V W+G + L EP++VGN T+L I+G G D A + G +++ V GAS+ L++LELR+G A +G G D LLV +C F NR
Sbjct: 40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRDGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A836CDQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ4_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.470e-8 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 208 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEDVSLLVSSCNFTANRAS 522
L E+ C D V W+G + + EP++VG+ TTL I G G + A + G ++L +V GAS+ LQ L LR+G GGAI+ DG+ S+ F N A+
Sbjct: 45 LTEAAACRDQNITVQWRGFVNVTEPIIVGDGTTLVINGWGADSEPAAISGQHATQLLRVQNGASVTLQELRLRDGFVEAGGDGGAIFNDGD---FTCSNSTFAINTAA 149
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Match: A0A835Z719_9STRA (UCH domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z719_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.640e-8 Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 208 LVESTNCSDGAFVVSWQGALTLPEPVVVGNSTTLSIEGAG---DGAVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPY--YNGGGAIYADGEDVSLLVSSCNFTANR 516
L E+T C V W+G + L EP++VGN T+L I+G G D A + G +++ V GAS+ L++LELR G A +G G D LLV +C F NR
Sbjct: 40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRVGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1053.383.1 >prot_E-siliculosus-1a_F_contig1053.383.1 ID=prot_E-siliculosus-1a_F_contig1053.383.1|Name=mRNA_E-siliculosus-1a_F_contig1053.383.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=298bp SSSSINSRGATSTLGTATTTTTTTTSALLLSLAVFAGRFSSSFAQQAAPPback to top mRNA from alignment at E-siliculosus-1a_F_contig1053:4225..6658- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1053.383.1 ID=mRNA_E-siliculosus-1a_F_contig1053.383.1|Name=mRNA_E-siliculosus-1a_F_contig1053.383.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:4225..6658- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:4225..6658- >mRNA_E-siliculosus-1a_F_contig1053.383.1 ID=mRNA_E-siliculosus-1a_F_contig1053.383.1|Name=mRNA_E-siliculosus-1a_F_contig1053.383.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:4225..6658- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |