prot_E-siliculosus-1a_F_contig1052.379.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1052.379.1
Unique Nameprot_E-siliculosus-1a_F_contig1052.379.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length250
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 3.180e-172
Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 249
            MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKV+ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 249          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 477 bits (1227), Expect = 1.430e-168
Identity = 237/249 (95.18%), Postives = 240/249 (96.39%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 249
            MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPC+YWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK+MPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD        RLAKHMK+GLAAMD 
Sbjct:   78 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHMKQGLAAMDA 326          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A5D6XUT6_9STRA (KH_dom_type_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUT6_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.330e-75
Identity = 115/225 (51.11%), Postives = 162/225 (72.00%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 225
            +D  F  TVVLPGDDVT   T+TTR ++LG GL Q +  +V+ T AGVLRYRP   YWV+ N +RY A ++D V+G+V DR A+ Y+VNI  + +A LG L FDGA+KR++P+LR G+LV+ RV+  +KD+E E+TC +  + SKKDWMTG + +GEL GG + + S+ L+K L + DC VL +L + +PFE+A G+NG  WV+S S  +T ++CNAILN+E +T
Sbjct:   30 VDFTFAPTVVLPGDDVTAALTKTTRCVKLGAGLKQLSDQRVVCTNAGVLRYRPANRYWVDYNYKRYAASLDDGVIGVVTDRNAEIYRVNIGAASSATLGALAFDGATKRNRPSLRIGALVYARVSKTHKDLEPEITCEAPANLSKKDWMTGLAVYGELSGGYVFKTSVTLAKRLLQEDCAVLAALGRRLPFEIAVGVNGVVWVNSRSSKNTTIVCNAILNAEALT 254          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.550e-75
Identity = 125/236 (52.97%), Postives = 162/236 (68.64%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRL 236
            +D  F    VLPGDDVT+      + LRLG GLV +    V  T AG+LRYRPP  YW++ N +RY A V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRV + NKD+E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K +PFE+AAG+NG  WV+SGS  +TI+I NAILNSE +TD        RL
Sbjct:   13 IDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGST-VSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSGSCHNTILITNAILNSEGLTDAQIEAMVDRL 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL)

HSP 1 Score: 237 bits (604), Expect = 1.140e-74
Identity = 119/225 (52.89%), Postives = 160/225 (71.11%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 225
            +D  F  TVVLPGDDVTE  T+T++++RLG GL     D+++ T AGVLRYRPP  YWVE + +RY   V+D V+G+V DR A+ Y+VNI  + +  LG L FDGA+KR++P+LR GSLV+ RV   N DME ELTC ++ + +KKDWMTG S +GEL GG + + S+ L+K L + D  VL++LAK + FE+A GLNG  WV+S +  HT V+ NAILNSE M+
Sbjct:   30 VDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTCEASANMTKKDWMTGLSVYGELTGGYVFKTSISLAKKLLQDDSYVLQALAKSIAFEIAVGLNGIVWVNSRATKHTTVVTNAILNSETMS 254          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 234 bits (598), Expect = 5.050e-74
Identity = 120/226 (53.10%), Postives = 159/226 (70.35%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD 226
            +D  FK   VLPGDDVT+     ++ LRLG GL+ +  + + +T AGVLRYRPP  YW++ N +RY   V+D V+G+V DR A+ Y+++I  S  A LGML FDGASKR++PNL+ G+LV+CRV + N+D+E  LTC +  H SKKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K MPFE+AAG NG  WV+S S   TI+I NAILNSE + D
Sbjct:   13 IDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANG-NAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPD 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 234 bits (598), Expect = 5.220e-74
Identity = 118/222 (53.15%), Postives = 157/222 (70.72%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSE 222
            +D  F     LPGDDVT+  T  TR LRLG GL+   Q++V+ T AGVLRYRPP  YW++ N +RY   V+D V+G++ DR A+ Y+V+I G+  A LGML FDGASKR++PNL+ GSL++CRV    KD+E  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + DC VL +L K +PFELA G+NG  W++S S A TI+I NAILNSE
Sbjct:   13 VDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNSKSNADTILITNAILNSE 234          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)

HSP 1 Score: 234 bits (597), Expect = 8.140e-74
Identity = 115/225 (51.11%), Postives = 159/225 (70.67%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 225
            +D  FK    LPGDD+T+  T  T+ LRLG GLV    ++V+ T AGVLRYRPP  YW++ N +RY   ++D V+G+V DR A+ Y+V+I GS  A LGML FDGASKR++PN++ GSLV+CRV    KD++  +TC +  H +KKDWMTG + +GEL GG + + S+ L+KSL + +C VL+SL + +PFELA G+NG  W++S S   TI++ NAILNSE +T
Sbjct:   13 IDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLT 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.350e-73
Identity = 120/242 (49.59%), Postives = 164/242 (67.77%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKK 242
            +D  FK   VLPGDDVT +   T + LRLG GLV     +VLAT AGVLRYRPP  YW++ N +RY   ++D V+G++ DR A+ Y+++I  S  A LGML FDGASKR++PNL+ GSLV+CRVA+ N+++E  LTC +  H +KKDWMTG + +GEL GG + + S+ L+KSL K +C VL +L + +PFE+A G NG  WV+SG+   TI+I NAILNSE + +        +L    K+
Sbjct:   13 IDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASG-TQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMVDKLISEYKR 253          
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A024TLH3_9STRA (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.240e-72
Identity = 114/225 (50.67%), Postives = 159/225 (70.67%), Query Frame = 0
Query:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 225
            +D  FK    LPGDD+T+  T  T+ LRLG GLV    ++V++T AGVLRYRPP  YW++ N +RY   +ED V+G++ DR A+ Y+V+I  S  A LGML FDGASKR++PNL+ G+LV+CRV    KD++  +TC +  H +KKDWMTG + +GEL GG + + S+ L+K+L + DC VL++L + +PFELA G+NG  W++S S   TI+I NAILNSE +T
Sbjct:   13 IDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGRAIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLT 237          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG41_ECTSI3.180e-17299.60RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5J8L0_9PHAE1.430e-16895.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XUT6_9STRA1.330e-7551.11KH_dom_type_1 domain-containing protein n=1 Tax=Py... [more]
A0A1V9Y536_9STRA1.550e-7552.97Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A8K1CT22_PYTOL1.140e-7452.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0R8U7_SAPDV5.050e-7453.10KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
A0A6G0XI83_9STRA5.220e-7453.15Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
W4FDB9_9STRA8.140e-7451.11Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A1W0A9P5_9STRA1.350e-7349.59Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
A0A024TLH3_9STRA1.240e-7250.67Ribosomal RNA-processing protein 40 n=3 Tax=Aphano... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041054Exosome complex exonuclease Rrp40, N-terminalPFAMPF18311Rrp40_Ncoord: 23..65
e-value: 5.1E-8
score: 32.7
NoneNo IPR availableGENE3D2.40.50.100coord: 7..67
e-value: 4.5E-7
score: 31.8
NoneNo IPR availableGENE3D2.40.50.140coord: 69..143
e-value: 1.2E-25
score: 91.0
NoneNo IPR availablePANTHERPTHR21321:SF1EXOSOME COMPLEX COMPONENT RRP40coord: 7..241
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 8..63
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 162..208
e-value: 1.2E-8
score: 35.2
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 153..239
e-value: 5.4E-22
score: 79.3
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 160..241
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 7..241
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 65..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1052contigE-siliculosus-1a_F_contig1052:30758..34104 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1052.379.1mRNA_E-siliculosus-1a_F_contig1052.379.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1052 30132..34496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1052.379.1 ID=prot_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp
MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLR
YRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGM
LEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMT
GQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGT
FWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHMKKGLAAMDT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR041054Rrp40_N