mRNA_E-siliculosus-1a_F_contig1052.379.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE) HSP 1 Score: 510 bits (1313), Expect = 2.650e-176 Identity = 254/266 (95.49%), Postives = 258/266 (96.99%), Query Frame = 1 Query: 304 TSFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMD 1101 +SFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPC+YWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK+MPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD RLAKHMK+GLAAMD Sbjct: 60 SSFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHMKQGLAAMD 325
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI) HSP 1 Score: 483 bits (1243), Expect = 6.580e-167 Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1 Query: 358 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 1104 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKV+ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT Sbjct: 1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 249
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA) HSP 1 Score: 245 bits (626), Expect = 5.960e-74 Identity = 129/247 (52.23%), Postives = 169/247 (68.42%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRL 1065 A++FL E ++D F VLPGDDVT+ + LRLG GLV + V T AG+LRYRPP YW++ N +RY A V+D V+G+V DR A+ Y+++I S A LGML FDGASKR++PNL+ GSLV+CRV + NKD+E LTC + H +KKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K +PFE+AAG+NG WV+SGS +TI+I NAILNSE +TD RL Sbjct: 2 AEEFLLSTEKSIDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGST-VSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSGSCHNTILITNAILNSEGLTDAQIEAMVDRL 247
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A5D6XUT6_9STRA (KH_dom_type_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUT6_9STRA) HSP 1 Score: 244 bits (622), Expect = 4.030e-73 Identity = 118/236 (50.00%), Postives = 167/236 (70.76%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032 A FL + ++D F TVVLPGDDVT T+TTR ++LG GL Q + +V+ T AGVLRYRP YWV+ N +RY A ++D V+G+V DR A+ Y+VNI + +A LG L FDGA+KR++P+LR G+LV+ RV+ +KD+E E+TC + + SKKDWMTG + +GEL GG + + S+ L+K L + DC VL +L + +PFE+A G+NG WV+S S +T ++CNAILN+E +T Sbjct: 19 ATKFLEEAQRSVDFTFAPTVVLPGDDVTAALTKTTRCVKLGAGLKQLSDQRVVCTNAGVLRYRPANRYWVDYNYKRYAASLDDGVIGVVTDRNAEIYRVNIGAASSATLGALAFDGATKRNRPSLRIGALVYARVSKTHKDLEPEITCEAPANLSKKDWMTGLAVYGELSGGYVFKTSVTLAKRLLQEDCAVLAALGRRLPFEIAVGVNGVVWVNSRSSKNTTIVCNAILNAEALT 254
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL) HSP 1 Score: 243 bits (620), Expect = 8.500e-73 Identity = 127/252 (50.40%), Postives = 170/252 (67.46%), Query Frame = 1 Query: 313 GKRKADD------------FLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032 GKRKAD+ FL + +D F TVVLPGDDVTE T+T++++RLG GL D+++ T AGVLRYRPP YWVE + +RY V+D V+G+V DR A+ Y+VNI + + LG L FDGA+KR++P+LR GSLV+ RV N DME ELTC ++ + +KKDWMTG S +GEL GG + + S+ L+K L + D VL++LAK + FE+A GLNG WV+S + HT V+ NAILNSE M+ Sbjct: 3 GKRKADEPIDATADDEASRFLEDAQRQVDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTCEASANMTKKDWMTGLSVYGELTGGYVFKTSISLAKKLLQDDSYVLQALAKSIAFEIAVGLNGIVWVNSRATKHTTVVTNAILNSETMS 254
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV) HSP 1 Score: 241 bits (616), Expect = 1.810e-72 Identity = 124/237 (52.32%), Postives = 166/237 (70.04%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD 1035 A++FL E ++D FK VLPGDDVT+ ++ LRLG GL+ + + + +T AGVLRYRPP YW++ N +RY V+D V+G+V DR A+ Y+++I S A LGML FDGASKR++PNL+ G+LV+CRV + N+D+E LTC + H SKKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K MPFE+AAG NG WV+S S TI+I NAILNSE + D Sbjct: 2 AEEFLLSTEKSIDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANG-NAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPD 237
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA) HSP 1 Score: 241 bits (615), Expect = 2.630e-72 Identity = 122/233 (52.36%), Postives = 164/233 (70.39%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSE 1023 A++FL E ++D F LPGDDVT+ T TR LRLG GL+ Q++V+ T AGVLRYRPP YW++ N +RY V+D V+G++ DR A+ Y+V+I G+ A LGML FDGASKR++PNL+ GSL++CRV KD+E +TC + H +KKDWMTG + +GEL GG + + S+ L+KSL + DC VL +L K +PFELA G+NG W++S S A TI+I NAILNSE Sbjct: 2 AEEFLISTEKSVDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNSKSNADTILITNAILNSE 234
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA) HSP 1 Score: 241 bits (615), Expect = 2.890e-72 Identity = 119/236 (50.42%), Postives = 166/236 (70.34%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032 A++FL E ++D FK LPGDD+T+ T T+ LRLG GLV ++V+ T AGVLRYRPP YW++ N +RY ++D V+G+V DR A+ Y+V+I GS A LGML FDGASKR++PN++ GSLV+CRV KD++ +TC + H +KKDWMTG + +GEL GG + + S+ L+KSL + +C VL+SL + +PFELA G+NG W++S S TI++ NAILNSE +T Sbjct: 2 AEEFLLTAEKSIDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLT 237
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA) HSP 1 Score: 240 bits (613), Expect = 4.720e-72 Identity = 124/253 (49.01%), Postives = 171/253 (67.59%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKK 1083 A++FL E ++D FK VLPGDDVT + T + LRLG GLV +VLAT AGVLRYRPP YW++ N +RY ++D V+G++ DR A+ Y+++I S A LGML FDGASKR++PNL+ GSLV+CRVA+ N+++E LTC + H +KKDWMTG + +GEL GG + + S+ L+KSL K +C VL +L + +PFE+A G NG WV+SG+ TI+I NAILNSE + + +L K+ Sbjct: 2 AEEFLLSTEQSIDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASG-TQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMVDKLISEYKR 253
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match: A0A024TLH3_9STRA (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA) HSP 1 Score: 238 bits (607), Expect = 4.150e-71 Identity = 118/236 (50.00%), Postives = 166/236 (70.34%), Query Frame = 1 Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032 A++FL E ++D FK LPGDD+T+ T T+ LRLG GLV ++V++T AGVLRYRPP YW++ N +RY +ED V+G++ DR A+ Y+V+I S A LGML FDGASKR++PNL+ G+LV+CRV KD++ +TC + H +KKDWMTG + +GEL GG + + S+ L+K+L + DC VL++L + +PFELA G+NG W++S S TI+I NAILNSE +T Sbjct: 2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGRAIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLT 237 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1052.379.1 >prot_E-siliculosus-1a_F_contig1052.379.1 ID=prot_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRback to top mRNA from alignment at E-siliculosus-1a_F_contig1052:30132..34496- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1052.379.1 ID=mRNA_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4365bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:30132..34496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1052:30132..34496- >mRNA_E-siliculosus-1a_F_contig1052.379.1 ID=mRNA_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:30132..34496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |