prot_E-siliculosus-1a_F_contig10518.375.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10518.375.1
Unique Nameprot_E-siliculosus-1a_F_contig10518.375.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length111
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 3.210e-56
Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVRDGLTA 108
            +AFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHA+ADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNV  G+  
Sbjct: 1080 KAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVLRGVDT 1186          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.140e-24
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGG-GEDDQGTGDDASAKELLMRLPGVNVYNFRNVR---DGLTA 108
            +AF L   GD+T +I++T+I S+L LLTLHFP LRILWS++ H T  +FK L   NA VDV KA  AGGG GE+D   G   +A++LL++LPGV V NFR++    D L A
Sbjct:  987 KAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGGTGEEDSEAGRHLTAQDLLLKLPGVTVSNFRSIMKRVDNLAA 1097          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.480e-20
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKE--LLMRLPGVNVYNFR 100
            +AF L G G+L+S+IK+ +I S++ LLT+HFPQLR+LWS+S HAT  +F+ LM+N A VD A A AAG       G  D  SA    LL+RLPGV   NFR
Sbjct:  253 RAFGLQGGGELSSDIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAGARA----GAADSNSAARRCLLLRLPGVTASNFR 349          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A7S3L7V4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7V4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.810e-18
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGG--------------GGEDDQGTGDDA--SAKELLMRLPGVNVYNFRNVRDGLTA 108
            ++FCL  S +L  EI+  S  S+L+LLT+HFP+LRILWS+  H T  +FK+L  N+  VDV KA   G               GGE+ +   D+   SA+E+L+RLPGVNV+  R + + +  
Sbjct:   89 KSFCLQNSSELGVEIRADSACSKLSLLTMHFPKLRILWSRGPHETLKIFKDLKMNHEEVDVEKAMEIGRNESVEALLRADKSKGGEEGEEEEDEINESAREMLLRLPGVNVHAARRIMEEVDT 211          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A1Y1I3K2_KLENI (Structure-specific endonuclease ERCC1-XPF n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3K2_KLENI)

HSP 1 Score: 89.0 bits (219), Expect = 2.520e-18
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD------DASAKELLMRLPGVNVYNFRNVRDGLTA 108
            ++F L  +G+LT +I  T+I S+L+LL LHFP+LRI+WS+S HATAD+F  L  N    DV KA   G   ED    GD      + +A+E+L RLPGV   N+R + DG+  
Sbjct: 1058 KSFSLQSAGELTDDIFGTNIISKLSLLVLHFPRLRIIWSRSVHATADIFAALKANQEEPDVKKAMVVGVPTEDGVIEGDRQGETYNTTAQEVLRRLPGVTDANYRMLMDGVKC 1170          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A4W4FA77_ELEEL (ERCC excision repair 4, endonuclease catalytic subunit n=3 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FA77_ELEEL)

HSP 1 Score: 87.8 bits (216), Expect = 6.300e-18
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0
Query:    4 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVRDGLTA 108
            F L+G  DL  EI  T +TS+LTLLTLHFP+LR+LW  S HATA++F+ L ++    D A AQA     E    + D  +    +LL+R+PGVNV NFR +    T+
Sbjct:  746 FSLVGRADLRQEISATDVTSKLTLLTLHFPRLRLLWCPSPHATAELFQGLKRDRPEPDAAAAQAVTAESETVGESADLYNPGPYDLLLRMPGVNVKNFRCLLKHATS 852          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: K0T254_THAOC (ERCC4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T254_THAOC)

HSP 1 Score: 86.3 bits (212), Expect = 2.180e-17
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 0
Query:    2 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGG---------GED-----DQGTGDDASAKELLMRLPGVNVYNFRNVR---DGLTA 108
            + F L    DL S+I+  SITS+LTLL +HFP+LR+LWS+S H T  +FK+L +N+  V+V KA   G           GED     D   G + +AK +L+RLPGVNV N R +    D + A
Sbjct:  714 KTFSLQNVCDLGSDIRKDSITSKLTLLCMHFPKLRLLWSRSPHETLKLFKKLKRNHEEVNVEKAIEVGSNDSLDELLRLGEDGAYNEDDAEGPNETAKRMLLRLPGVNVNNARKIMSECDSIAA 837          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A1V9ZKY2_9STRA (DNA repair endonuclease XPF n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKY2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.520e-17
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 0
Query:    4 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVRDGLT 107
            F L   G++T++IK +SITS+L+LL LHFPQLR LWSKS  AT ++FK++ K +   DV  A A G     +  +  + +A ++L +LPG+  +N+R V   +T
Sbjct:  694 FALQEVGEITTDIKHSSITSKLSLLVLHFPQLRFLWSKSPQATVELFKQVKKGHDDPDVEAAVAVGSAAGANSSSFYNMNAVDVLRKLPGITAHNYRKVAAHVT 797          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.630e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0
Query:   51 KELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV 94
            +ELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV
Sbjct: 1052 QELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV 1095          
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A8B9KGV4_ASTMX (Excision repair cross-complementation group 4 n=5 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KGV4_ASTMX)

HSP 1 Score: 84.3 bits (207), Expect = 1.040e-16
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 0
Query:    4 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNV 102
            F L+   DL  EI    ITS+LTLLTLHFP+LR+LW  S HATA++F+EL +     D   AQA     +  + + D  +    +LL+RLPGVNV NFR +
Sbjct:  773 FSLVARSDLRQEISANDITSKLTLLTLHFPRLRLLWCPSPHATAELFQELKRGRPEPDAEVAQAITAESDTVEESADLYNPGPYDLLLRLPGVNVKNFRGL 873          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEA6_9PHAE3.210e-5693.46ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D5Y9_9STRA1.140e-2452.25ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
A0A836CHN3_9STRA1.480e-2052.48Restriction endonuclease type II-like protein n=1 ... [more]
A0A7S3L7V4_9STRA1.810e-1840.65Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Y1I3K2_KLENI2.520e-1845.13Structure-specific endonuclease ERCC1-XPF n=1 Tax=... [more]
A0A4W4FA77_ELEEL6.300e-1845.79ERCC excision repair 4, endonuclease catalytic sub... [more]
K0T254_THAOC2.180e-1742.74ERCC4 domain-containing protein n=1 Tax=Thalassios... [more]
A0A1V9ZKY2_9STRA5.520e-1742.31DNA repair endonuclease XPF n=1 Tax=Achlya hypogyn... [more]
D7FH45_ECTSI5.630e-1797.73ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A8B9KGV4_ASTMX1.040e-1646.53Excision repair cross-complementation group 4 n=5 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10130coord: 5..64
e-value: 4.5E-9
score: 38.0
NoneNo IPR availablePANTHERPTHR10150DNA REPAIR ENDONUCLEASE XPFcoord: 3..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10518contigE-siliculosus-1a_F_contig10518:1805..2406 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10518.375.1mRNA_E-siliculosus-1a_F_contig10518.375.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10518 1805..2406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10518.375.1 ID=prot_E-siliculosus-1a_F_contig10518.375.1|Name=mRNA_E-siliculosus-1a_F_contig10518.375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
MQAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMF
KELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFR
NVRDGLTAFF*
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