mRNA_E-siliculosus-1a_F_contig10518.375.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE) HSP 1 Score: 197 bits (500), Expect = 3.210e-56 Identity = 100/107 (93.46%), Postives = 103/107 (96.26%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVRDGLTA 324 +AFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHA+ADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNV G+ Sbjct: 1080 KAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHASADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVLRGVDT 1186
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.140e-24 Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGG-GEDDQGTGDDASAKELLMRLPGVNVYNFRNVR---DGLTA 324 +AF L GD+T +I++T+I S+L LLTLHFP LRILWS++ H T +FK L NA VDV KA AGGG GE+D G +A++LL++LPGV V NFR++ D L A Sbjct: 987 KAFSLQAPGDITDDIQVTNIVSKLVLLTLHFPALRILWSRNSHQTVLLFKALKAGNAPVDVQKALTAGGGTGEEDSEAGRHLTAQDLLLKLPGVTVSNFRSIMKRVDNLAA 1097
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A836CHN3_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHN3_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.480e-20 Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKE--LLMRLPGVNVYNFR 300 +AF L G G+L+S+IK+ +I S++ LLT+HFPQLR+LWS+S HAT +F+ LM+N A VD A A AAG G D SA LL+RLPGV NFR Sbjct: 253 RAFGLQGGGELSSDIKVDAICSKMALLTMHFPQLRVLWSRSPHATVAIFEALMRNEAPVDAAAALAAGARA----GAADSNSAARRCLLLRLPGVTASNFR 349
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A7S3L7V4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L7V4_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.810e-18 Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGG--------------GGEDDQGTGDDA--SAKELLMRLPGVNVYNFRNVRDGLTA 324 ++FCL S +L EI+ S S+L+LLT+HFP+LRILWS+ H T +FK+L N+ VDV KA G GGE+ + D+ SA+E+L+RLPGVNV+ R + + + Sbjct: 89 KSFCLQNSSELGVEIRADSACSKLSLLTMHFPKLRILWSRGPHETLKIFKDLKMNHEEVDVEKAMEIGRNESVEALLRADKSKGGEEGEEEEDEINESAREMLLRLPGVNVHAARRIMEEVDT 211
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A1Y1I3K2_KLENI (Structure-specific endonuclease ERCC1-XPF n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3K2_KLENI) HSP 1 Score: 89.0 bits (219), Expect = 2.520e-18 Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD------DASAKELLMRLPGVNVYNFRNVRDGLTA 324 ++F L +G+LT +I T+I S+L+LL LHFP+LRI+WS+S HATAD+F L N DV KA G ED GD + +A+E+L RLPGV N+R + DG+ Sbjct: 1058 KSFSLQSAGELTDDIFGTNIISKLSLLVLHFPRLRIIWSRSVHATADIFAALKANQEEPDVKKAMVVGVPTEDGVIEGDRQGETYNTTAQEVLRRLPGVTDANYRMLMDGVKC 1170
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A4W4FA77_ELEEL (ERCC excision repair 4, endonuclease catalytic subunit n=3 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FA77_ELEEL) HSP 1 Score: 87.8 bits (216), Expect = 6.300e-18 Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 10 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNVRDGLTA 324 F L+G DL EI T +TS+LTLLTLHFP+LR+LW S HATA++F+ L ++ D A AQA E + D + +LL+R+PGVNV NFR + T+ Sbjct: 746 FSLVGRADLRQEISATDVTSKLTLLTLHFPRLRLLWCPSPHATAELFQGLKRDRPEPDAAAAQAVTAESETVGESADLYNPGPYDLLLRMPGVNVKNFRCLLKHATS 852
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: K0T254_THAOC (ERCC4 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T254_THAOC) HSP 1 Score: 86.3 bits (212), Expect = 2.180e-17 Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 1 Query: 4 QAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGG---------GED-----DQGTGDDASAKELLMRLPGVNVYNFRNVR---DGLTA 324 + F L DL S+I+ SITS+LTLL +HFP+LR+LWS+S H T +FK+L +N+ V+V KA G GED D G + +AK +L+RLPGVNV N R + D + A Sbjct: 714 KTFSLQNVCDLGSDIRKDSITSKLTLLCMHFPKLRLLWSRSPHETLKLFKKLKRNHEEVNVEKAIEVGSNDSLDELLRLGEDGAYNEDDAEGPNETAKRMLLRLPGVNVNNARKIMSECDSIAA 837
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A1V9ZKY2_9STRA (DNA repair endonuclease XPF n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKY2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 5.520e-17 Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 1 Query: 10 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGVNVYNFRNVRDGLT 321 F L G++T++IK +SITS+L+LL LHFPQLR LWSKS AT ++FK++ K + DV A A G + + + +A ++L +LPG+ +N+R V +T Sbjct: 694 FALQEVGEITTDIKHSSITSKLSLLVLHFPQLRFLWSKSPQATVELFKQVKKGHDDPDVEAAVAVGSAAGANSSSFYNMNAVDVLRKLPGITAHNYRKVAAHVT 797
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 5.630e-17 Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 Query: 151 KELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV 282 +ELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV Sbjct: 1052 QELMKNNAAVDVAKAQAAGGGGEDDQGTGDDASAKELLMRLPGV 1095
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Match: A0A8B9KGV4_ASTMX (Excision repair cross-complementation group 4 n=5 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9KGV4_ASTMX) HSP 1 Score: 84.3 bits (207), Expect = 1.040e-16 Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 10 FCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFKELMKNNAAVDVAKAQAAGGGGEDDQGTGD--DASAKELLMRLPGVNVYNFRNV 306 F L+ DL EI ITS+LTLLTLHFP+LR+LW S HATA++F+EL + D AQA + + + D + +LL+RLPGVNV NFR + Sbjct: 773 FSLVARSDLRQEISANDITSKLTLLTLHFPRLRLLWCPSPHATAELFQELKRGRPEPDAEVAQAITAESDTVEESADLYNPGPYDLLLRLPGVNVKNFRGL 873 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10518.375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10518.375.1 >prot_E-siliculosus-1a_F_contig10518.375.1 ID=prot_E-siliculosus-1a_F_contig10518.375.1|Name=mRNA_E-siliculosus-1a_F_contig10518.375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp MQAFCLLGSGDLTSEIKLTSITSQLTLLTLHFPQLRILWSKSEHATADMFback to top mRNA from alignment at E-siliculosus-1a_F_contig10518:1805..2406- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10518.375.1 ID=mRNA_E-siliculosus-1a_F_contig10518.375.1|Name=mRNA_E-siliculosus-1a_F_contig10518.375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=602bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10518:1805..2406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10518:1805..2406- >mRNA_E-siliculosus-1a_F_contig10518.375.1 ID=mRNA_E-siliculosus-1a_F_contig10518.375.1|Name=mRNA_E-siliculosus-1a_F_contig10518.375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10518:1805..2406- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |