|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: D7FMV5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV5_ECTSI) HSP 1 Score: 374 bits (961), Expect = 5.670e-122 Identity = 293/341 (85.92%), Postives = 302/341 (88.56%), Query Frame = 2 Query: 8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA-TRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEGLLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX-GAGEREGDADIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
+++VKEHLRSLPERYALTVSPEDVL+HMALFAAVSAAAAETATQKHASS+SS SAQ+ESLGAEPPTVRVVARPSPLALSSSHPA AGDGEGG+ CGSGLAGVGRAY LTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA TRS GL+LARLEVRVIGG GLTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LE L AG E XXXXXXXXXXX GAGEREG ADIELLELAG+GRFSRTYRARWRGSTVAVKTLELPPEVDRE EAAGAEIVGDG GSRAVVVAEFEREL
Sbjct: 82 LEEVKEHLRSLPERYALTVSPEDVLEHMALFAAVSAAAAETATQKHASSSSSDSAQDESLGAEPPTVRVVARPSPLALSSSHPAVAGDGEGGMSCGSGLAGVGRAYRLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTAVTRSCGLTLARLEVRVIGGLGLTAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----LEDLXXXXXXXXXXXAGGEXXXXXXXXXXXXXXXXXDGAGEREGKADIELLELAGKGRFSRTYRARWRGSTVAVKTLELPPEVDREQEAAGAEIVGDGGGSRAVVVAEFEREL 417
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: A0A6H5KIL9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL9_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.660e-56 Identity = 239/532 (44.92%), Postives = 258/532 (48.50%), Query Frame = 2 Query: 8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGA-----------------------------------------------------------------------------------------------------------------------------------------------SCLDVDVVSTTRTTATRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEG--LLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX---------------------GAGE-------------REGDA--------------DIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
+++VKEHLRSLPERYALTVSPEDVLDHMA FAAVSAAAAETAT+KH SS+SSASAQ+ SLG EPP VRVVARPS LALSSS PAAAGDGEGG+ C SGLAGVGRAYSLTVAC QSPLLLGAISSSL+S GA C D + T + A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E R +G L+ + A AL G+ GXXXXXXXXXXX GA + +GD+ DIELLELAG+GRFSRTYRARWR STVAVKTLELPPEVDRE +AAGAEIVGDG GSRAVVVAEFEREL
Sbjct: 44 LEEVKEHLRSLPERYALTVSPEDVLDHMAHFAAVSAAAAETATRKHVSSSSSASAQDRSLGEEPPLVRVVARPSVLALSSSEPAAAGDGEGGMSCESGLAGVGRAYSLTVACLQSPLLLGAISSSLQSTGAVLSPEGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEEVXXXXXXXXXXXXDGAGEREGEAVSAEPPPAGAKRERLGRSGRVPDGAAPGDGXXXXXXXXXXXXGQCSDGGFSRSQPLATTTPRXXXXXXXXXXXVXXXXXXTADYAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGWRWGNREPLARRQGCFFLAEADANALGSNGNSDASHFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNGANDSAFFSPCTSSEIGNDGDSTHGGDCRYSTIPPEDIELLELAGKGRFSRTYRARWRRSTVAVKTLELPPEVDREQDAAGAEIVGDGGGSRAVVVAEFEREL 575
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 522 |
| Model size | 1026 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10510.374.1 >prot_E-siliculosus-1a_F_contig10510.374.1 ID=prot_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp
PHCSGRKGAPPVTAGEVRPNREPGGRAGSHGPLRRGERRRCRNRYSETRL
LHLLCLRPRGIAGRRTPNGTGGRPPVTAGVVIVASRGGGGRGGGSALRFG
ASGRRQGVQLDGGLSSKPAAPRGYIVLAAVCRSFLPRRGRGVHHKDNSDA
LLRVVVGTPRGTGHRRTGPDCRV* back to topmRNA from alignment at E-siliculosus-1a_F_contig10510:133..2150- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2018bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGT
ACGCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTC
GCCGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTC
CTCCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCC
CAACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCG
CATCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGG
GCTAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAA
GCCCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGGT
ACGCTGGGGTTTCGCAAATGATTCGAGACAGACGTCCTATTCGTACCCGT
CGTTGTAGCTCTCTGCTTCCGGAGCGGTGTGTGGCGGTTGTCATATCGTT
TGTTTTTTTTTTCTCTCTCAAGTCGTTTGTGAGGTCTTTGATCATTGCGG
GTTGTTGGTGTTGGTCATGTTGTTGTGCTCGTCTTTCACCACGAGATATT
TCGCGATCGACCCTCCACCTCTCTCCCTCGGCTGTTTTCCCGTCCGTGTG
CCCCCCCCCCTGTCTTCAGCTTCTTGCCTCGACGTGGACGTGGTGTCCAC
CACAAGGACAACAGCGACGCGCTCCTACGGGTTGTCGTTGGCACGCCTCG
AGGTACGGGTCATCGGCGGACCGGGCCTGACTGCCGCGTCTAGCGCAGCG
GCGGAAGCAGCGGCGGCGGCAGGAGCGGGAGGAACCGCTGCGTCGTCATC
GGCGTCGGCGTCAGGTTGGCGACGGCGGTCCTCAGCCCAGAGGGGGGAAA
TGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGATG
CCCCGCCGCCTGGAAGGTTTGTTGTCGTCATCCATTGCCGCCGCTCTCCT
CTTGGCCGGGGACGAGGGAGAGGGGCGGAGCGGGCAGGAGGAGGAGGATG
AGGAGGAGGAGGAGGACGGGGCGGGGGAGAGGGAAGGCGACGCCGTGAGC
CCCGAGCCGCCTCCAGCGGGGGACAAACGAGAGCGCTTCGGTCGCGGGGG
GCAAGCAGCCGACGGTGCCGCCCATGGAGACGGCGGCGGCGGAGGCGGTG
GGGACGGGCAGCGTAGCGACGGCGGTGTCAGCCGTTCTCAGCCGCTTGCG
ACGACTACCCCGTGGGGGGGGACGACGGCGGCAGCTGCTCGACGAGCGCA
GGTAACCTCGTCTTCAGTAGGCACCGCAGATTGTGCTGGTGTAGGGGGCA
CCGCACAGTGTGCGGGGGGTACCGTAACGCCTGCAGGGGGTACCGCAACG
GCCGCAGCTGGCGGGGGGGCAAGCGACAGCAACTCTCGTTGCTGCTCCTC
CTCCTCCTCTCGCGGGCGGCGGCGGGGCAACCGGGAGCCCCTGGCCCGGC
GGCAGGGCTGCTTCTTCCTGGCGGAAGCCGACGCGAACGCGCTCGGTAGC
AACGGCAACAGCGACGCGTCTCATTTCGGTGGAGGCGGCGGCGGCGGTGC
CGCCAGCTGCGCCAAGTCGCTTGGCAACAGTAGCACCAGCAACAACAACG
CCACCAGCAACAACAACAACAACAACAACAACAACAACAGCAATGGCAAC
AGCAAGAACGGCGCAAACGACAGCACCGTCTTCAGCCCGTGCACCAGGAG
CGAGATCGGCAACGACGGCGACAGCACGCACGGCGGGGACTGCCGGTACT
CCACGATCCCCCCGGAGGACATCGAGCTCCTCGAGCTGGCCGGGAGGGGC
AGGTTCAGCCGCACGTACAGGGCGAGGTGGAGAGGGTCCACGGTCGCGGT
GAAGACGCTGGAGCTTCCGCCGGAGGTGGATCGAGAGCACGAGGCGGCGG
GTGCGGAAATCGTCGGCGACGGCGATGGGAGCAGGGCCGTCGTGGTGGCT
GAGTTTGAGCGCGAGCTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10510:133..2150- >mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGT
ACGCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTC
GCCGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTC
CTCCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCC
CAACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCG
CATCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGG
GCTAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAA
GCCCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGCC
CCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGTAC
GCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTCGC
CGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTCCT
CCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCCCA
ACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCGCA
TCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGGGC
TAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAAGC
CCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGCTTC
TTGCCTCGACGTGGACGTGGTGTCCACCACAAGGACAACAGCGACGCGCT
CCTACGGGTTGTCGTTGGCACGCCTCGAGGTACGGGTCATCGGCGGACCG
GGCCTGACTGCCGCGTCTAGCTTCTTGCCTCGACGTGGACGTGGTGTCCA
CCACAAGGACAACAGCGACGCGCTCCTACGGGTTGTCGTTGGCACGCCTC
GAGGTACGGGTCATCGGCGGACCGGGCCTGACTGCCGCGTCTAG back to top
|