mRNA_E-siliculosus-1a_F_contig10510.374.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10510.374.1
Unique NamemRNA_E-siliculosus-1a_F_contig10510.374.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: D7FMV5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV5_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 5.670e-122
Identity = 293/341 (85.92%), Postives = 302/341 (88.56%), Query Frame = 2 
Query:    8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA-TRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEGLLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX-GAGEREGDADIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
            +++VKEHLRSLPERYALTVSPEDVL+HMALFAAVSAAAAETATQKHASS+SS SAQ+ESLGAEPPTVRVVARPSPLALSSSHPA AGDGEGG+ CGSGLAGVGRAY LTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTA TRS GL+LARLEVRVIGG GLTA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LE L           AG E      XXXXXXXXXXX GAGEREG ADIELLELAG+GRFSRTYRARWRGSTVAVKTLELPPEVDRE EAAGAEIVGDG GSRAVVVAEFEREL
Sbjct:   82 LEEVKEHLRSLPERYALTVSPEDVLEHMALFAAVSAAAAETATQKHASSSSSDSAQDESLGAEPPTVRVVARPSPLALSSSHPAVAGDGEGGMSCGSGLAGVGRAYRLTVACRQSPLLLGAISSSLRSAGASCLDVDVVSTTRTTAVTRSCGLTLARLEVRVIGGLGLTAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----LEDLXXXXXXXXXXXAGGEXXXXXXXXXXXXXXXXXDGAGEREGKADIELLELAGKGRFSRTYRARWRGSTVAVKTLELPPEVDREQEAAGAEIVGDGGGSRAVVVAEFEREL 417
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Match: A0A6H5KIL9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL9_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.660e-56
Identity = 239/532 (44.92%), Postives = 258/532 (48.50%), Query Frame = 2 
Query:    8 VQDVKEHLRSLPERYALTVSPEDVLDHMALFAAVSAAAAETATQKHASSTSSASAQEESLGAEPPTVRVVARPSPLALSSSHPAAAGDGEGGVPCGSGLAGVGRAYSLTVACRQSPLLLGAISSSLRSAGA-----------------------------------------------------------------------------------------------------------------------------------------------SCLDVDVVSTTRTTATRSYGLSLARLEVRVIGGPGLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEMPRRLEG--LLSSSIAAALLLAGDEGEGRSGXXXXXXXXXXX---------------------GAGE-------------REGDA--------------DIELLELAGRGRFSRTYRARWRGSTVAVKTLELPPEVDREHEAAGAEIVGDGDGSRAVVVAEFEREL 1024
            +++VKEHLRSLPERYALTVSPEDVLDHMA FAAVSAAAAETAT+KH SS+SSASAQ+ SLG EPP VRVVARPS LALSSS PAAAGDGEGG+ C SGLAGVGRAYSLTVAC QSPLLLGAISSSL+S GA                                                                                                                                                C D     +     T              +       A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         E   R +G   L+ + A AL   G+      GXXXXXXXXXXX                     GA +              +GD+              DIELLELAG+GRFSRTYRARWR STVAVKTLELPPEVDRE +AAGAEIVGDG GSRAVVVAEFEREL
Sbjct:   44 LEEVKEHLRSLPERYALTVSPEDVLDHMAHFAAVSAAAAETATRKHVSSSSSASAQDRSLGEEPPLVRVVARPSVLALSSSEPAAAGDGEGGMSCESGLAGVGRAYSLTVACLQSPLLLGAISSSLQSTGAVLSPEGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEEVXXXXXXXXXXXXDGAGEREGEAVSAEPPPAGAKRERLGRSGRVPDGAAPGDGXXXXXXXXXXXXGQCSDGGFSRSQPLATTTPRXXXXXXXXXXXVXXXXXXTADYAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGWRWGNREPLARRQGCFFLAEADANALGSNGNSDASHFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKNGANDSAFFSPCTSSEIGNDGDSTHGGDCRYSTIPPEDIELLELAGKGRFSRTYRARWRRSTVAVKTLELPPEVDREQDAAGAEIVGDGGGSRAVVVAEFEREL 575
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10510.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMV5_ECTSI5.670e-12285.92Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5KIL9_9PHAE5.660e-5644.92Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10510contigE-siliculosus-1a_F_contig10510:133..2150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size522
Model size1026
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10510.374.1prot_E-siliculosus-1a_F_contig10510.374.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10510 1358..2150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.000392-UTR-E-siliculosus-1a_F_contig10510:132..3331622927554.000392-UTR-E-siliculosus-1a_F_contig10510:132..333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10510 133..333 -
1696318582.9292831-UTR-E-siliculosus-1a_F_contig10510:132..3331696318582.9292831-UTR-E-siliculosus-1a_F_contig10510:132..333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10510 133..333 -
1622927554.0130575-UTR-E-siliculosus-1a_F_contig10510:1056..13571622927554.0130575-UTR-E-siliculosus-1a_F_contig10510:1056..1357Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10510 1057..1357 -
1696318582.9378834-UTR-E-siliculosus-1a_F_contig10510:1056..13571696318582.9378834-UTR-E-siliculosus-1a_F_contig10510:1056..1357Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10510 1057..1357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.027599-CDS-E-siliculosus-1a_F_contig10510:1357..14811622927554.027599-CDS-E-siliculosus-1a_F_contig10510:1357..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10510 1358..1481 -
1696318582.9480786-CDS-E-siliculosus-1a_F_contig10510:1357..14811696318582.9480786-CDS-E-siliculosus-1a_F_contig10510:1357..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10510 1358..1481 -
1622927554.040539-CDS-E-siliculosus-1a_F_contig10510:1752..21501622927554.040539-CDS-E-siliculosus-1a_F_contig10510:1752..2150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10510 1753..2150 -
1696318582.9577255-CDS-E-siliculosus-1a_F_contig10510:1752..21501696318582.9577255-CDS-E-siliculosus-1a_F_contig10510:1752..2150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10510 1753..2150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10510.374.1

>prot_E-siliculosus-1a_F_contig10510.374.1 ID=prot_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp
PHCSGRKGAPPVTAGEVRPNREPGGRAGSHGPLRRGERRRCRNRYSETRL
LHLLCLRPRGIAGRRTPNGTGGRPPVTAGVVIVASRGGGGRGGGSALRFG
ASGRRQGVQLDGGLSSKPAAPRGYIVLAAVCRSFLPRRGRGVHHKDNSDA
LLRVVVGTPRGTGHRRTGPDCRV*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10510:133..2150-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2018bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGT
ACGCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTC
GCCGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTC
CTCCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCC
CAACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCG
CATCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGG
GCTAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAA
GCCCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGGT
ACGCTGGGGTTTCGCAAATGATTCGAGACAGACGTCCTATTCGTACCCGT
CGTTGTAGCTCTCTGCTTCCGGAGCGGTGTGTGGCGGTTGTCATATCGTT
TGTTTTTTTTTTCTCTCTCAAGTCGTTTGTGAGGTCTTTGATCATTGCGG
GTTGTTGGTGTTGGTCATGTTGTTGTGCTCGTCTTTCACCACGAGATATT
TCGCGATCGACCCTCCACCTCTCTCCCTCGGCTGTTTTCCCGTCCGTGTG
CCCCCCCCCCTGTCTTCAGCTTCTTGCCTCGACGTGGACGTGGTGTCCAC
CACAAGGACAACAGCGACGCGCTCCTACGGGTTGTCGTTGGCACGCCTCG
AGGTACGGGTCATCGGCGGACCGGGCCTGACTGCCGCGTCTAGCGCAGCG
GCGGAAGCAGCGGCGGCGGCAGGAGCGGGAGGAACCGCTGCGTCGTCATC
GGCGTCGGCGTCAGGTTGGCGACGGCGGTCCTCAGCCCAGAGGGGGGAAA
TGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGATG
CCCCGCCGCCTGGAAGGTTTGTTGTCGTCATCCATTGCCGCCGCTCTCCT
CTTGGCCGGGGACGAGGGAGAGGGGCGGAGCGGGCAGGAGGAGGAGGATG
AGGAGGAGGAGGAGGACGGGGCGGGGGAGAGGGAAGGCGACGCCGTGAGC
CCCGAGCCGCCTCCAGCGGGGGACAAACGAGAGCGCTTCGGTCGCGGGGG
GCAAGCAGCCGACGGTGCCGCCCATGGAGACGGCGGCGGCGGAGGCGGTG
GGGACGGGCAGCGTAGCGACGGCGGTGTCAGCCGTTCTCAGCCGCTTGCG
ACGACTACCCCGTGGGGGGGGACGACGGCGGCAGCTGCTCGACGAGCGCA
GGTAACCTCGTCTTCAGTAGGCACCGCAGATTGTGCTGGTGTAGGGGGCA
CCGCACAGTGTGCGGGGGGTACCGTAACGCCTGCAGGGGGTACCGCAACG
GCCGCAGCTGGCGGGGGGGCAAGCGACAGCAACTCTCGTTGCTGCTCCTC
CTCCTCCTCTCGCGGGCGGCGGCGGGGCAACCGGGAGCCCCTGGCCCGGC
GGCAGGGCTGCTTCTTCCTGGCGGAAGCCGACGCGAACGCGCTCGGTAGC
AACGGCAACAGCGACGCGTCTCATTTCGGTGGAGGCGGCGGCGGCGGTGC
CGCCAGCTGCGCCAAGTCGCTTGGCAACAGTAGCACCAGCAACAACAACG
CCACCAGCAACAACAACAACAACAACAACAACAACAACAGCAATGGCAAC
AGCAAGAACGGCGCAAACGACAGCACCGTCTTCAGCCCGTGCACCAGGAG
CGAGATCGGCAACGACGGCGACAGCACGCACGGCGGGGACTGCCGGTACT
CCACGATCCCCCCGGAGGACATCGAGCTCCTCGAGCTGGCCGGGAGGGGC
AGGTTCAGCCGCACGTACAGGGCGAGGTGGAGAGGGTCCACGGTCGCGGT
GAAGACGCTGGAGCTTCCGCCGGAGGTGGATCGAGAGCACGAGGCGGCGG
GTGCGGAAATCGTCGGCGACGGCGATGGGAGCAGGGCCGTCGTGGTGGCT
GAGTTTGAGCGCGAGCTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10510:133..2150-

>mRNA_E-siliculosus-1a_F_contig10510.374.1 ID=mRNA_E-siliculosus-1a_F_contig10510.374.1|Name=mRNA_E-siliculosus-1a_F_contig10510.374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10510:133..2150- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGT
ACGCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTC
GCCGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTC
CTCCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCC
CAACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCG
CATCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGG
GCTAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAA
GCCCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGCC
CCATTGTTCAGGACGTAAAGGAGCACCTCCGGTCACTGCCGGAGAGGTAC
GCCCTAACCGTGAGCCCGGAGGACGTGCTGGATCACATGGCCCTCTTCGC
CGCGGTGAGCGCCGCCGCTGCCGAAACCGCTACTCAGAAACACGCCTCCT
CCACCTCCTCTGCCTCCGCCCAAGAGGAATCGCTGGGCGCAGAACCCCCA
ACGGTACGGGTGGTCGCCCGCCCGTCACCGCTGGCGTTGTCATCGTCGCA
TCCCGCGGCGGCGGGGGACGGGGAGGGGGGAGTGCCCTGCGGTTCGGGGC
TAGCGGGCGTCGGCAGGGCGTACAGCTTGACGGTGGCTTGTCGTCAAAGC
CCGCTGCTCCTCGGGGCTATATCGTCCTCGCTGCGGTCTGCCGGAGCTTC
TTGCCTCGACGTGGACGTGGTGTCCACCACAAGGACAACAGCGACGCGCT
CCTACGGGTTGTCGTTGGCACGCCTCGAGGTACGGGTCATCGGCGGACCG
GGCCTGACTGCCGCGTCTAGCTTCTTGCCTCGACGTGGACGTGGTGTCCA
CCACAAGGACAACAGCGACGCGCTCCTACGGGTTGTCGTTGGCACGCCTC
GAGGTACGGGTCATCGGCGGACCGGGCCTGACTGCCGCGTCTAG
back to top