prot_E-siliculosus-1a_F_contig1051.372.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1051.372.1
Unique Nameprot_E-siliculosus-1a_F_contig1051.372.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length596
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 826 bits (2133), Expect = 6.410e-297
Identity = 446/501 (89.02%), Postives = 459/501 (91.62%), Query Frame = 0
Query:   97 EAFASFPFDATASLVRRKGSGTRPPVGWEVKSSHQLAVSLRHPDPGAPGTTTPFGRDAGGGCQAGALVAGQAQRRSGGGGDIAGCRKVVPAGAGAVGSMETRECKAVAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTGGPHAHGEHGEKHLEGGELDESLGKHDHFSACHRXXXXXXXXXXXXLSQEMKVCNSWTGSAQTDAPSIGSDDDNDDTAGRLRCGSGGSNCCSETARADSKACAKGAAALFVTEQHLATKAEAEVLPLSRLAEQQKSAAAVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAICFACSVLSGMLSFVTGPVVRFFRGFWERR-QQREQTGDGGGDREAGERSDAA-GVVSFAPPALDSPAATPLPPSVVAA 595
            +AFASFPFDATASLVRRKGSGTRPPVGWEVKSS QLA SLRHPDPG+PGTTTPFGRD GGGC+AGALVAGQAQRRSGGG DI GCRKVVPAGAGAVGSMETRE KA AGAVRSPK GDTLHMLAPPSDIG VGRGGARG FGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGP HS  GPHAHGE+GEKHLE GEL ESLGKHDHF ACHRXXXXXX      LSQEMKV +SWTGSAQTDAPSIGSDDDNDDTA RLRCGSGGSNCCSETA  DSKACAKGAAAL VTEQ LATKA AEVLPLS LAE Q SAAAVS VVSGADGSARANDETVVRVSELPDVCAICLGQYA GEEVHVLPCLHIFHAECLDVWI GHPSCPYCKGDLNVIPQENNSS ETTAIC+ACSVLSGM+SFVTGP+VRFFRG WERR QQREQT +GGGDREAGE ++AA GVVSFAPPAL+S AATP+PPSVVAA
Sbjct:   56 QAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGSPGTTTPFGRDPGGGCRAGALVAGQAQRRSGGG-DITGCRKVVPAGAGAVGSMETRESKAAAGAVRSPKIGDTLHMLAPPSDIGQVGRGGARGAFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPCHSADGPHAHGENGEKHLEVGELGESLGKHDHFLACHRXXXXXXRPFHQHLSQEMKVSSSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAALLVTEQQLATKAGAEVLPLSPLAEHQNSAAAVSVVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIPQENNSSSETTAICYACSVLSGMVSFVTGPLVRFFRGIWERRRQQREQTAEGGGDREAGEGNEAAEGVVSFAPPALESSAATPVPPSVVAA 555          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 748 bits (1931), Expect = 1.030e-267
Identity = 420/558 (75.27%), Postives = 428/558 (76.70%), Query Frame = 0
Query:   40 MVAVVSQGYLCAIFVSIPPSGEEDDFVVILMSLHDSQATGRVVSYDPKTRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSHQLAVSLRHPDPGAPGTTTPFGRDAGGGCQAGALVAGQAQRRSGGGGDIAGCRKVVPAGAGAVGSMETRECKAVAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTGGPHAHGEHGEKHLEGGELDESLGKHDHFSACHRXXXXXXXXXXXXLSQEMKVCNSWTGSAQTDAPSIGSDDDNDDTAGRLRCGSGGSNCCSETARADSKACAKGAAALFVTEQHLATKAEAEVLPLSRLAEQQKSAAAVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAICFACSVLSGMLSFVTGPVVRFFRGFWERR-QQREQTGDGGGDREAGERSDAA-GVVSFAPPALDSPAATPLPPSVVAA 595
            MVAVVSQGYLCAIFVSIPP                          DPK RGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSS QLA SLRHPDPGAPGTTTPFGRDA   CQAGALVAGQAQRRSGGG DIAG RKVVPAGAGAVGSMETRECKA AGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDA A AAA AEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHST GPHAHGE+GEKHLEGGEL ESLGKHDHFSACHR    XXXX    LSQEMKVC+SWTGSAQTDAPSIGSDDDNDDTA RLR                                                                      ANDETVVRVSELPDVCAICLGQYA GEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSS ETTAIC+ACSVLS M+SFV GP VRFFRG WERR QQREQT +GGGDREAGE ++AA GVV FAPPALDSPAATP+PPSVVAA
Sbjct:    1 MVAVVSQGYLCAIFVSIPP--------------------------DPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGG-DIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHCXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLR----------------------------------------------------------------------ANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA 461          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 74.3 bits (181), Expect = 1.040e-12
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0
Query:  459 CAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDL 503
            C ICL +Y AGEE+ VLPCLH FHAEC+D W++ +PSCP C+ D+
Sbjct:   47 CRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A836CLU7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-12
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 0
Query:  448 TVVRVSELPDVCAICLGQYAAGEEVHVLPC--LHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAI 519
            T V  SEL   C ICLG Y  GE +  LPC   H++H EC+++W+ GH +CPYCK DL ++  E   SP  TA+
Sbjct:   64 TAVATSELQ--CVICLGDYTTGESLCRLPCPFQHVYHVECINLWLDGHSTCPYCKYDL-MLAAEEEQSPSATAM 134          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: UPI000C1CE394 (RING-H2 finger protein ATL8-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE394)

HSP 1 Score: 76.3 bits (186), Expect = 3.090e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0
Query:  451 RVSELPDVCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNV 505
            RV +L D CAIC+ ++AAGEEV VLP C HIFH EC+D W+R H SCP C+ +L V
Sbjct:  101 RVEKLAD-CAICMAEFAAGEEVRVLPQCRHIFHVECVDTWLRSHSSCPSCRENLVV 155          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 0
Query:  444 ANDETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 508
            A+ + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   73 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 139          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 0
Query:  444 ANDETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 508
            A+ + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   75 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 141          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 72.4 bits (176), Expect = 1.220e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 0
Query:  447 ETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 508
            + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   46 QLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 109          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.510e-11
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0
Query:  449 VVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNV 505
            V+R SEL   C++CL  Y   E V +LPC H++H EC+D+W+R H  CPYC+ D+NV
Sbjct:  312 VIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNV 368          
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A3B6TT23_WHEAT (RING-type domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6TT23_WHEAT)

HSP 1 Score: 71.6 bits (174), Expect = 5.110e-11
Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  459 CAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETT 517
            C++CLG   AGE V +LP C H++H EC+D+W+  H +CP C+ ++   P E++  PE T
Sbjct:   95 CSVCLGTVQAGEMVRLLPLCKHLYHVECIDMWLASHDTCPLCRAEVEPQPPEDDGQPEVT 154          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT04_9PHAE6.410e-29789.02RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LAX1_ECTSI1.030e-26775.27RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8C3ZMD8_9TELE1.040e-1262.22RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A836CLU7_9STRA2.120e-1247.30RING-type domain-containing protein n=1 Tax=Tribon... [more]
UPI000C1CE3943.090e-1260.71RING-H2 finger protein ATL8-like n=1 Tax=Olea euro... [more]
A0A5E4F3R2_PRUDU1.020e-1143.28RING-type E3 ubiquitin transferase n=2 Tax=Prunus ... [more]
A0A251NVP6_PRUPE1.070e-1143.28RING-type E3 ubiquitin transferase n=4 Tax=Prunus ... [more]
A0A4Y1RQH7_PRUDU1.220e-1143.75RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]
D8LS07_ECTSI1.510e-1150.88RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A3B6TT23_WHEAT5.110e-1143.33RING-type domain-containing protein n=12 Tax=Triti... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 459..499
e-value: 4.0E-6
score: 36.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 458..500
e-value: 2.6E-12
score: 46.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 459..500
score: 12.032
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 418..505
e-value: 2.0E-16
score: 61.4
NoneNo IPR availablePANTHERPTHR14155:SF202coord: 392..503
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 392..503
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 516..541
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 542..595
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..515
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 452..506
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1051contigE-siliculosus-1a_F_contig1051:26819..30553 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1051.372.1mRNA_E-siliculosus-1a_F_contig1051.372.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1051 26819..30553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1051.372.1 ID=prot_E-siliculosus-1a_F_contig1051.372.1|Name=mRNA_E-siliculosus-1a_F_contig1051.372.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=596bp
LFGSGLIFSTGLVWFFVQAWIFAIEAQTVWLIILLTVTTMVAVVSQGYLC
AIFVSIPPSGEEDDFVVILMSLHDSQATGRVVSYDPKTRGVTQINREAFA
SFPFDATASLVRRKGSGTRPPVGWEVKSSHQLAVSLRHPDPGAPGTTTPF
GRDAGGGCQAGALVAGQAQRRSGGGGDIAGCRKVVPAGAGAVGSMETREC
KAVAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDAGAT
AAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTGGPHAHGEH
GEKHLEGGELDESLGKHDHFSACHRHRHRHRRHYHQHLSQEMKVCNSWTG
SAQTDAPSIGSDDDNDDTAGRLRCGSGGSNCCSETARADSKACAKGAAAL
FVTEQHLATKAEAEVLPLSRLAEQQKSAAAVSAVVSGADGSARANDETVV
RVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCK
GDLNVIPQENNSSPETTAICFACSVLSGMLSFVTGPVVRFFRGFWERRQQ
REQTGDGGGDREAGERSDAAGVVSFAPPALDSPAATPLPPSVVAA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING