mRNA_E-siliculosus-1a_F_contig1051.372.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE) HSP 1 Score: 826 bits (2133), Expect = 6.410e-297 Identity = 446/501 (89.02%), Postives = 459/501 (91.62%), Query Frame = 1 Query: 289 EAFASFPFDATASLVRRKGSGTRPPVGWEVKSSHQLAVSLRHPDPGAPGTTTPFGRDAGGGCQAGALVAGQAQRRSGGGGDIAGCRKVVPAGAGAVGSMETRECKAVAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTGGPHAHGEHGEKHLEGGELDESLGKHDHFSACHRXXXXXXXXXXXXLSQEMKVCNSWTGSAQTDAPSIGSDDDNDDTAGRLRCGSGGSNCCSETARADSKACAKGAAALFVTEQHLATKAEAEVLPLSRLAEQQKSAAAVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAICFACSVLSGMLSFVTGPVVRFFRGFWERR-QQREQTGDGGGDREAGERSDAA-GVVSFAPPALDSPAATPLPPSVVAA 1785
+AFASFPFDATASLVRRKGSGTRPPVGWEVKSS QLA SLRHPDPG+PGTTTPFGRD GGGC+AGALVAGQAQRRSGGG DI GCRKVVPAGAGAVGSMETRE KA AGAVRSPK GDTLHMLAPPSDIG VGRGGARG FGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGP HS GPHAHGE+GEKHLE GEL ESLGKHDHF ACHRXXXXXX LSQEMKV +SWTGSAQTDAPSIGSDDDNDDTA RLRCGSGGSNCCSETA DSKACAKGAAAL VTEQ LATKA AEVLPLS LAE Q SAAAVS VVSGADGSARANDETVVRVSELPDVCAICLGQYA GEEVHVLPCLHIFHAECLDVWI GHPSCPYCKGDLNVIPQENNSS ETTAIC+ACSVLSGM+SFVTGP+VRFFRG WERR QQREQT +GGGDREAGE ++AA GVVSFAPPAL+S AATP+PPSVVAA
Sbjct: 56 QAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGSPGTTTPFGRDPGGGCRAGALVAGQAQRRSGGG-DITGCRKVVPAGAGAVGSMETRESKAAAGAVRSPKIGDTLHMLAPPSDIGQVGRGGARGAFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPCHSADGPHAHGENGEKHLEVGELGESLGKHDHFLACHRXXXXXXRPFHQHLSQEMKVSSSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAALLVTEQQLATKAGAEVLPLSPLAEHQNSAAAVSVVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIPQENNSSSETTAICYACSVLSGMVSFVTGPLVRFFRGIWERRRQQREQTAEGGGDREAGEGNEAAEGVVSFAPPALESSAATPVPPSVVAA 555
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI) HSP 1 Score: 748 bits (1931), Expect = 1.030e-267 Identity = 420/558 (75.27%), Postives = 428/558 (76.70%), Query Frame = 1 Query: 118 MVAVVSQGYLCAIFVSIPPSGEEDDFVVILMSLHDSQATGRVVSYDPKTRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSHQLAVSLRHPDPGAPGTTTPFGRDAGGGCQAGALVAGQAQRRSGGGGDIAGCRKVVPAGAGAVGSMETRECKAVAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTGGPHAHGEHGEKHLEGGELDESLGKHDHFSACHRXXXXXXXXXXXXLSQEMKVCNSWTGSAQTDAPSIGSDDDNDDTAGRLRCGSGGSNCCSETARADSKACAKGAAALFVTEQHLATKAEAEVLPLSRLAEQQKSAAAVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAICFACSVLSGMLSFVTGPVVRFFRGFWERR-QQREQTGDGGGDREAGERSDAA-GVVSFAPPALDSPAATPLPPSVVAA 1785
MVAVVSQGYLCAIFVSIPP DPK RGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSS QLA SLRHPDPGAPGTTTPFGRDA CQAGALVAGQAQRRSGGG DIAG RKVVPAGAGAVGSMETRECKA AGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDA A AAA AEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHST GPHAHGE+GEKHLEGGEL ESLGKHDHFSACHR XXXX LSQEMKVC+SWTGSAQTDAPSIGSDDDNDDTA RLR ANDETVVRVSELPDVCAICLGQYA GEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSS ETTAIC+ACSVLS M+SFV GP VRFFRG WERR QQREQT +GGGDREAGE ++AA GVV FAPPALDSPAATP+PPSVVAA
Sbjct: 1 MVAVVSQGYLCAIFVSIPP--------------------------DPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGG-DIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHCXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLR----------------------------------------------------------------------ANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA 461
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE) HSP 1 Score: 74.3 bits (181), Expect = 1.040e-12 Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 Query: 1375 CAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDL 1509
C ICL +Y AGEE+ VLPCLH FHAEC+D W++ +PSCP C+ D+
Sbjct: 47 CRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A836CLU7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.120e-12 Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1342 TVVRVSELPDVCAICLGQYAAGEEVHVLPC--LHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETTAI 1557
T V SEL C ICLG Y GE + LPC H++H EC+++W+ GH +CPYCK DL ++ E SP TA+
Sbjct: 64 TAVATSELQ--CVICLGDYTTGESLCRLPCPFQHVYHVECINLWLDGHSTCPYCKYDL-MLAAEEEQSPSATAM 134
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: UPI000C1CE394 (RING-H2 finger protein ATL8-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE394) HSP 1 Score: 76.3 bits (186), Expect = 3.090e-12 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1351 RVSELPDVCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNV 1515
RV +L D CAIC+ ++AAGEEV VLP C HIFH EC+D W+R H SCP C+ +L V
Sbjct: 101 RVEKLAD-CAICMAEFAAGEEVRVLPQCRHIFHVECVDTWLRSHSSCPSCRENLVV 155
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU) HSP 1 Score: 73.6 bits (179), Expect = 1.020e-11 Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 1330 ANDETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1524
A+ + + V E+ D +CA+CL ++ GE + VLP C+H+FHAEC+D+W+ H +CP C+ D+ PQ
Sbjct: 73 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 139
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE) HSP 1 Score: 73.6 bits (179), Expect = 1.070e-11 Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 1330 ANDETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1524
A+ + + V E+ D +CA+CL ++ GE + VLP C+H+FHAEC+D+W+ H +CP C+ D+ PQ
Sbjct: 75 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 141
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU) HSP 1 Score: 72.4 bits (176), Expect = 1.220e-11 Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 1339 ETVVRVSELPD-VCAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1524
+ + V E+ D +CA+CL ++ GE + VLP C+H+FHAEC+D+W+ H +CP C+ D+ PQ
Sbjct: 46 QLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 109
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.510e-11 Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 Query: 1345 VVRVSELPDVCAICLGQYAAGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNV 1515
V+R SEL C++CL Y E V +LPC H++H EC+D+W+R H CPYC+ D+NV
Sbjct: 312 VIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNV 368
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Match: A0A3B6TT23_WHEAT (RING-type domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6TT23_WHEAT) HSP 1 Score: 71.6 bits (174), Expect = 5.110e-11 Identity = 26/60 (43.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 1375 CAICLGQYAAGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSPETT 1551
C++CLG AGE V +LP C H++H EC+D+W+ H +CP C+ ++ P E++ PE T
Sbjct: 95 CSVCLGTVQAGEMVRLLPLCKHLYHVECIDMWLASHDTCPLCRAEVEPQPPEDDGQPEVT 154 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1051.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1051.372.1 >prot_E-siliculosus-1a_F_contig1051.372.1 ID=prot_E-siliculosus-1a_F_contig1051.372.1|Name=mRNA_E-siliculosus-1a_F_contig1051.372.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=596bp LFGSGLIFSTGLVWFFVQAWIFAIEAQTVWLIILLTVTTMVAVVSQGYLCback to top mRNA from alignment at E-siliculosus-1a_F_contig1051:26819..30553+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1051.372.1 ID=mRNA_E-siliculosus-1a_F_contig1051.372.1|Name=mRNA_E-siliculosus-1a_F_contig1051.372.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3735bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1051:26819..30553+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1051:26819..30553+ >mRNA_E-siliculosus-1a_F_contig1051.372.1 ID=mRNA_E-siliculosus-1a_F_contig1051.372.1|Name=mRNA_E-siliculosus-1a_F_contig1051.372.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1051:26819..30553+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |