mRNA_E-siliculosus-1a_F_contig16488.3673.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16488.3673.1
Unique NamemRNA_E-siliculosus-1a_F_contig16488.3673.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: A0A5R9AHF4_9FLAO (HTTM domain-containing protein n=1 Tax=Maribacter sp. ACAM166 TaxID=2508996 RepID=A0A5R9AHF4_9FLAO)

HSP 1 Score: 387 bits (995), Expect = 6.940e-131
Identity = 187/250 (74.80%), Postives = 205/250 (82.00%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            FK+KYIN   EAAPLAVFRILFGLMM +SI+RFWSYGWIDKLYIQPKFFFSYYG EWIKP G+YT+L+F +C LSA+F+ LGYKY+IAI+ FFLSFTYIELMDKTTYLNHYYF+SA SFLM+FLP NAYFS DAF+NPKKAFQ +P WTIN +KLLLGIVYFYAGLAKLNSDWL KAMPLKIWLPSKFD PLLG+LLSQEWVQYAFSWVG GYDLA  F    +K    A      F       FP   F
Sbjct:    4 FKQKYINNLAEAAPLAVFRILFGLMMLISIVRFWSYGWIDKLYIQPKFFFSYYGFEWIKPLGHYTYLIFVVCALSAVFVALGYKYKIAIITFFLSFTYIELMDKTTYLNHYYFVSALSFLMIFLPANAYFSLDAFRNPKKAFQHVPVWTINCIKLLLGIVYFYAGLAKLNSDWLVKAMPLKIWLPSKFDTPLLGDLLSQEWVQYAFSWVGTGYDLAIPFLLLYRKTRTFAFVLVVIFHVLTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: A0A5B7SVV6_9FLAO (HTTM domain-containing protein n=1 Tax=Aggregatimonas sangjinii TaxID=2583587 RepID=A0A5B7SVV6_9FLAO)

HSP 1 Score: 382 bits (981), Expect = 9.180e-129
Identity = 187/249 (75.10%), Postives = 208/249 (83.53%), Query Frame = 1
Query:    4 KKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            ++KYI KSVEAAPLAVFRILFGLMM LSI+RFWSYGWI KLYI+PK FFSYYG EW+KP G+YT+L+F IC LSAIF+ +GYKY++AIL FFLSFTYIELMDKTTYLNHYYFISA SFLMLFLP N YFS DA +NPK AFQ++PAWT+NS+KLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLG+LLSQEWVQYAFSW GAGYDLA  F    +K  ++A      F       FP   F
Sbjct:    5 REKYIFKSVEAAPLAVFRILFGLMMLLSIVRFWSYGWIQKLYIEPKLFFSYYGFEWVKPLGDYTYLIFLICALSAIFVAVGYKYKLAILTFFLSFTYIELMDKTTYLNHYYFISALSFLMLFLPANVYFSADAKRNPKIAFQRVPAWTLNSIKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGDLLSQEWVQYAFSWAGAGYDLAIPFLLLYRKTRVMAFALVVVFHVLTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: UPI00188B71C9 (HTTM domain-containing protein n=3 Tax=Zobellia TaxID=112040 RepID=UPI00188B71C9)

HSP 1 Score: 370 bits (949), Expect = 6.450e-124
Identity = 183/250 (73.20%), Postives = 200/250 (80.00%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            F  K+I+  +EAAPLAVFRILFG+MM LSIIRFWSYGWI+KLYIQPKFFFSYYG EW+KP G YT+L+F ICGLSAIF+ LGYKY++AIL FF+SFTYIELMDKTTYLNHYYFIS  SFLM+FLP NAYFS DA  +PKKAFQ+IPAWTIN +KLLLGIVYFYAGLAKLNSDWL KAMPLKIWLPSKFD PLLG  L +EWVQYAFSW GAGYDLA  F    KK    A      F       FP   F
Sbjct:    4 FINKHISAPIEAAPLAVFRILFGVMMLLSIIRFWSYGWIEKLYIQPKFFFSYYGFEWVKPLGVYTYLIFIICGLSAIFVALGYKYKLAILTFFISFTYIELMDKTTYLNHYYFISLLSFLMIFLPANAYFSLDAKYHPKKAFQKIPAWTINGIKLLLGIVYFYAGLAKLNSDWLLKAMPLKIWLPSKFDTPLLGQFLHEEWVQYAFSWFGAGYDLAIPFLLLYKKTRPYAFVVVVVFHVMTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: A0A7H9AS43_9FLAO (HTTM domain-containing protein n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9AS43_9FLAO)

HSP 1 Score: 367 bits (943), Expect = 5.220e-123
Identity = 177/247 (71.66%), Postives = 201/247 (81.38%), Query Frame = 1
Query:   10 KYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            K I   VEAAPLAVFRILFGLMMF+ I+RFWSYGWI+KLY++PKF FS+YG EW+KP G YT+++F +CGLSA+ I++GYKYRIAI++FFLSFTYIELMDKTTYLNHYYFIS  SFLM+FLP NAYFS DA +NP+KAFQ IPAW+INS+KL+LGIVYFYAGLAKLNSDWL KAMPLKIWLPSKFDIP LGN+LS EWVQYAFSW+GAGYDLA  F    KK    A      F       FP   F
Sbjct:    7 KLIKAPVEAAPLAVFRILFGLMMFMGIVRFWSYGWIEKLYLEPKFHFSFYGFEWVKPIGGYTYIIFLVCGLSALLISIGYKYRIAIIIFFLSFTYIELMDKTTYLNHYYFISILSFLMVFLPANAYFSVDAMKNPQKAFQYIPAWSINSIKLILGIVYFYAGLAKLNSDWLLKAMPLKIWLPSKFDIPFLGNMLSLEWVQYAFSWLGAGYDLAIPFLLLYKKTRSYAFVLVVVFHVLTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: A0A3Q9FFT9_9FLAO (HTTM domain-containing protein n=2 Tax=unclassified Maribacter TaxID=2615042 RepID=A0A3Q9FFT9_9FLAO)

HSP 1 Score: 367 bits (942), Expect = 7.170e-123
Identity = 182/250 (72.80%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            F  K+I    EAAPLAVFRILFGLMM +SIIRFWSYGWIDKLYIQPK FFSYYG EW+KP G+YT+LLF ICG+SA F+ LGY+YRI+I+VFFLSFTYIELMDKTTYLNHYYFIS  SFLM+FLP  AYFS DA +NPKKAFQ IPAWTINS+KLLLGIVY YAGLAKLNSDWLFKAMPLKIWLPSKF IPL+G+LLS+EWV YAFSW GA YDLA  F    K+    A      F       FP   F
Sbjct:    3 FVAKHIKAPTEAAPLAVFRILFGLMMLISIIRFWSYGWIDKLYIQPKLFFSYYGFEWVKPIGDYTYLLFAICGISAFFVALGYRYRISIIVFFLSFTYIELMDKTTYLNHYYFISILSFLMIFLPAQAYFSVDAARNPKKAFQYIPAWTINSIKLLLGIVYVYAGLAKLNSDWLFKAMPLKIWLPSKFHIPLIGDLLSEEWVHYAFSWTGAIYDLAIPFLLLSKRTRPYAFILVVVFHVLTRVLFPIGMF 252          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: G0L6K3_ZOBGA (Vitamin K-dependent gamma-glutamyl carboxylase n=9 Tax=Flavobacteriaceae TaxID=49546 RepID=G0L6K3_ZOBGA)

HSP 1 Score: 366 bits (940), Expect = 1.490e-122
Identity = 179/250 (71.60%), Postives = 198/250 (79.20%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            F  K+I   +EAAPLAVFRILFG+MM LSI+RFWSYGWI+KLYIQPK FFSYYG EW+KP G YT+L+F ICGLSAIF+ LGY+YR+AI++FFLSFTYIELMDKTTYLNHYYFIS   FLM+FLP NAYFS DA  NPKKAFQ+IPAWT+N +KL+LGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFD PLLG  L +EWVQYAFSW GA YDLA  F    KK    A      F       FP   F
Sbjct:    4 FISKHITAPIEAAPLAVFRILFGVMMLLSIVRFWSYGWIEKLYIQPKLFFSYYGFEWVKPLGAYTYLIFIICGLSAIFVALGYRYRMAIIMFFLSFTYIELMDKTTYLNHYYFISLVGFLMIFLPANAYFSLDAKLNPKKAFQKIPAWTVNGIKLMLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDTPLLGQFLHEEWVQYAFSWFGASYDLAIPFLLLYKKTRPFAFLMVVVFHVTTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: A0A426RJA3_9FLAO (HTTM domain-containing protein n=1 Tax=Maribacter algicola TaxID=2498892 RepID=A0A426RJA3_9FLAO)

HSP 1 Score: 365 bits (937), Expect = 4.230e-122
Identity = 178/248 (71.77%), Postives = 198/248 (79.84%), Query Frame = 1
Query:    7 KKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            KKYIN  VEAAPLAVFRI FG MM  SI+RFW+YGWIDKLYIQP+FFFSYYG EW+KP GN+T+LLF ICGLSA  + LGY+YRI+I++FFLSFTYIELMDKTTYLNHYYFIS  SFLM+FLP  AYFS DA  N +KA+Q IPAWTINS+KLLLGIVYFYAG+AKLNSDWLF+AMPLKIWLPSKFDIP +G+LL QEWVQYAFSW GA YDLA  F   +KK    A      F       FP   F
Sbjct:    6 KKYINDPVEAAPLAVFRIFFGFMMLFSILRFWAYGWIDKLYIQPRFFFSYYGFEWVKPIGNFTYLLFAICGLSAFLVALGYRYRISIVLFFLSFTYIELMDKTTYLNHYYFISILSFLMIFLPAEAYFSLDARNNKEKAYQFIPAWTINSIKLLLGIVYFYAGVAKLNSDWLFRAMPLKIWLPSKFDIPFIGDLLGQEWVQYAFSWTGALYDLAIPFLLLVKKTRPYAFVLVIIFHVLTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: UPI001C070EB7 (HTTM domain-containing protein n=2 Tax=Zobellia TaxID=112040 RepID=UPI001C070EB7)

HSP 1 Score: 361 bits (926), Expect = 2.020e-120
Identity = 176/250 (70.40%), Postives = 197/250 (78.80%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            F  K+I+  +EAAPLAVFRILFG+MM LSI+RFWSYGWI+KLYIQPKFFFSYYG EW+KP G+YT+ +F IC LSAIF+TLGYKY++AI+ FFLSFTYIELMDKTTYLNHYYFIS  SFLM+FLP NAYFS DA Q    AFQ+IPAWT+NS+KL+LGIVYFYAGLAKLNSDWL KAMPLKIWLPSKFD P  G+ L +EWVQYAFSW GAGYDLA  F    KK    A      F       FP   F
Sbjct:    4 FISKHISAPIEAAPLAVFRILFGVMMLLSIVRFWSYGWIEKLYIQPKFFFSYYGFEWVKPLGDYTYFIFVICALSAIFVTLGYKYKVAIVTFFLSFTYIELMDKTTYLNHYYFISLLSFLMIFLPANAYFSLDAKQRSHIAFQKIPAWTVNSIKLMLGIVYFYAGLAKLNSDWLLKAMPLKIWLPSKFDTPFFGHFLHEEWVQYAFSWFGAGYDLAIPFLLLYKKTRPFAFIMVVIFHVMTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: UPI00126A5992 (HTTM domain-containing protein n=1 Tax=Pelagihabitans pacificus TaxID=2696054 RepID=UPI00126A5992)

HSP 1 Score: 360 bits (925), Expect = 2.770e-120
Identity = 174/249 (69.88%), Postives = 199/249 (79.92%), Query Frame = 1
Query:    4 KKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            +K+Y+ KSVEAAPLAVFRILFG MMF SI+RFW YGWIDKLYI+P FFFSYYG EW+KP   +T+LLF ICGLSAI + +GY+YR+AI+VFFLSF+YIELMDKTTYLNHYYFIS  SFLM+FLP N Y++ DA ++P++AFQ IP W INSLKLLLGIVYFYAGLAKLNSDWL KAMPLKIWLPSKFDIP LG+LL +EWVQYAFSW+GAGYDLA  F    +K    A      F       FP   F
Sbjct:    5 RKRYLTKSVEAAPLAVFRILFGTMMFFSIVRFWGYGWIDKLYIRPSFFFSYYGFEWVKPLEGFTYLLFAICGLSAILVAIGYRYRMAIVVFFLSFSYIELMDKTTYLNHYYFISILSFLMIFLPANCYYALDAKRSPERAFQYIPVWAINSLKLLLGIVYFYAGLAKLNSDWLLKAMPLKIWLPSKFDIPFLGDLLGREWVQYAFSWLGAGYDLAIPFLLLYRKTRPFAFGLVVVFHVLTRVLFPIGMF 253          
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Match: UPI00047896B5 (HTTM domain-containing protein n=1 Tax=Maribacter antarcticus TaxID=505250 RepID=UPI00047896B5)

HSP 1 Score: 359 bits (921), Expect = 1.120e-119
Identity = 176/250 (70.40%), Postives = 199/250 (79.60%), Query Frame = 1
Query:    1 FKKKYINKSVEAAPLAVFRILFGLMMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGLSAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFLPPNAYFS*DAFQNPKKAFQQIPAWTINSLKLLLGIVYFYAGLAKLNSDWLFKAMPLKIWLPSKFDIPLLGNLLSQEWVQYAFSWVGAGYDLAFLFYCFIKKQELLALYXXXXFMF*REFCFPSECF 750
            F K+YIN  VEAAPLAVFRILFG+MM  S+IRFWSYGWIDKLY+QP +FFSYYG EWIKP G +T+L+F IC +SAIF+ +GY+Y IAI+VFFLSFTYIELMDKTTYLNHYYFIS  SF+M+FLP + YFS DA +NPKKA Q +PAWTIN +KLLLG+VYFYAGLAKLNSDWL KAMPLKIWLPSKFDIPLLG+L+SQEWVQYAFSW GA YDLA  F    +K    A      F       FP   F
Sbjct:    4 FLKEYINAPVEAAPLAVFRILFGVMMLGSMIRFWSYGWIDKLYVQPTYFFSYYGFEWIKPLGEFTYLIFFICAVSAIFVAIGYRYTIAIIVFFLSFTYIELMDKTTYLNHYYFISVLSFVMIFLPASTYFSVDATRNPKKANQYVPAWTINCIKLLLGVVYFYAGLAKLNSDWLIKAMPLKIWLPSKFDIPLLGDLVSQEWVQYAFSWSGAMYDLAIPFLLLYRKTRPFAFVLVVVFHVLTRVLFPIGMF 253          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16488.3673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5R9AHF4_9FLAO6.940e-13174.80HTTM domain-containing protein n=1 Tax=Maribacter ... [more]
A0A5B7SVV6_9FLAO9.180e-12975.10HTTM domain-containing protein n=1 Tax=Aggregatimo... [more]
UPI00188B71C96.450e-12473.20HTTM domain-containing protein n=3 Tax=Zobellia Ta... [more]
A0A7H9AS43_9FLAO5.220e-12371.66HTTM domain-containing protein n=1 Tax=Costertonia... [more]
A0A3Q9FFT9_9FLAO7.170e-12372.80HTTM domain-containing protein n=2 Tax=unclassifie... [more]
G0L6K3_ZOBGA1.490e-12271.60Vitamin K-dependent gamma-glutamyl carboxylase n=9... [more]
A0A426RJA3_9FLAO4.230e-12271.77HTTM domain-containing protein n=1 Tax=Maribacter ... [more]
UPI001C070EB72.020e-12070.40HTTM domain-containing protein n=2 Tax=Zobellia Ta... [more]
UPI00126A59922.770e-12069.88HTTM domain-containing protein n=1 Tax=Pelagihabit... [more]
UPI00047896B51.120e-11970.40HTTM domain-containing protein n=1 Tax=Maribacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16488contigE-siliculosus-1a_F_contig16488:8..846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size324
Model size839
Exons1
Hectar predicted targeting categorysignal anchor
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.G
EggNOG OGs1HYIU@117743,4NE9C@976,COG3250@1,COG3250@2
EggNOG free text desc.PFAM Vitamin K-dependent gamma-carboxylase
Seed eggNOG ortholog143224.JQMD01000002_gene4179
Seed ortholog evalue4.5e-44
Seed ortholog score183.7
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16488.3673.1prot_E-siliculosus-1a_F_contig16488.3673.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16488 80..403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928154.5578718-UTR-E-siliculosus-1a_F_contig16488:7..791622928154.5578718-UTR-E-siliculosus-1a_F_contig16488:7..79Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16488 8..79 +
1696318826.4671383-UTR-E-siliculosus-1a_F_contig16488:7..791696318826.4671383-UTR-E-siliculosus-1a_F_contig16488:7..79Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16488 8..79 +
1622928154.7016163-UTR-E-siliculosus-1a_F_contig16488:403..8461622928154.7016163-UTR-E-siliculosus-1a_F_contig16488:403..846Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16488 404..846 +
1696318826.504179-UTR-E-siliculosus-1a_F_contig16488:403..8461696318826.504179-UTR-E-siliculosus-1a_F_contig16488:403..846Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16488 404..846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928154.6877525-CDS-E-siliculosus-1a_F_contig16488:79..4031622928154.6877525-CDS-E-siliculosus-1a_F_contig16488:79..403Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16488 80..403 +
1696318826.4788766-CDS-E-siliculosus-1a_F_contig16488:79..4031696318826.4788766-CDS-E-siliculosus-1a_F_contig16488:79..403Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16488 80..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16488.3673.1

>prot_E-siliculosus-1a_F_contig16488.3673.1 ID=prot_E-siliculosus-1a_F_contig16488.3673.1|Name=mRNA_E-siliculosus-1a_F_contig16488.3673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp
MMFLSIIRFWSYGWIDKLYIQPKFFFSYYGIEWIKPFGNYTHLLFGICGL
SAIFITLGYKYRIAILVFFLSFTYIELMDKTTYLNHYYFISASSFLMLFL
PPNAYFS*
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mRNA from alignment at E-siliculosus-1a_F_contig16488:8..846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16488.3673.1 ID=mRNA_E-siliculosus-1a_F_contig16488.3673.1|Name=mRNA_E-siliculosus-1a_F_contig16488.3673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=839bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16488:8..846+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTAAAAAGAAATATATAAACAAATCTGTGGAGGCCGCCCCATTGGCGGT CTTTCGCATTCTGTTTGGTTTGATGATGTTTCTCAGTATTATTCGTTTTT GGAGTTATGGATGGATCGATAAATTGTACATACAACCTAAATTCTTTTTC TCGTATTATGGTATTGAATGGATAAAGCCCTTTGGCAATTATACCCATCT GCTTTTTGGTATCTGCGGGCTATCAGCAATTTTTATTACACTTGGATATA AATATAGAATTGCGATTCTGGTCTTTTTTCTCAGTTTCACTTATATCGAA TTGATGGATAAAACCACATATTTAAATCACTATTATTTTATAAGCGCATC CAGTTTCTTAATGCTTTTTTTGCCGCCAAATGCCTATTTTTCTTGAGACG CTTTTCAGAATCCCAAAAAAGCTTTTCAACAGATTCCTGCATGGACCATT AACAGTTTAAAACTATTATTAGGCATCGTTTATTTTTATGCTGGCTTAGC AAAGTTGAATTCTGACTGGTTGTTTAAAGCTATGCCGTTGAAGATATGGT TGCCCTCAAAGTTTGATATCCCTCTTTTAGGTAACCTACTGAGTCAAGAA TGGGTGCAATATGCTTTTAGTTGGGTTGGTGCTGGTTATGATTTAGCATT CCTTTTTTATTGCTTTATAAAAAAACAAGAACTGTTGGCTTTGTATTGGT GGTGGTTTTTCATGTTTTGACGCGAGTTTTGTTTCCCATCGGAATGTTTC CTTACATTATGATAATTTCCACCTTGATTTTCTTTGAAGCAAGTTTGCAT CATAAAATATTGGATTTTGTTGCAAAGTTATTCCTTATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16488:8..846+

>mRNA_E-siliculosus-1a_F_contig16488.3673.1 ID=mRNA_E-siliculosus-1a_F_contig16488.3673.1|Name=mRNA_E-siliculosus-1a_F_contig16488.3673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16488:8..846+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGTTTCTCAGTATTATTCGTTTTTGGAGTTATGGATGGATCGATAA
ATTGTACATACAACCTAAATTCTTTTTCTCGTATTATGGTATTGAATGGA
TAAAGCCCTTTGGCAATTATACCCATCTGCTTTTTGGTATCTGCGGGCTA
TCAGCAATTTTTATTACACTTGGATATAAATATAGAATTGCGATTCTGGT
CTTTTTTCTCAGTTTCACTTATATCGAATTGATGGATAAAACCACATATT
TAAATCACTATTATTTTATAAGCGCATCCAGTTTCTTAATGCTTTTTTTG
CCGCCAAATGCCTATTTTTCTTGAATGATGTTTCTCAGTATTATTCGTTT
TTGGAGTTATGGATGGATCGATAAATTGTACATACAACCTAAATTCTTTT
TCTCGTATTATGGTATTGAATGGATAAAGCCCTTTGGCAATTATACCCAT
CTGCTTTTTGGTATCTGCGGGCTATCAGCAATTTTTATTACACTTGGATA
TAAATATAGAATTGCGATTCTGGTCTTTTTTCTCAGTTTCACTTATATCG
AATTGATGGATAAAACCACATATTTAAATCACTATTATTTTATAAGCGCA
TCCAGTTTCTTAATGCTTTTTTTGCCGCCAAATGCCTATTTTTCTTGA
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