mRNA_E-siliculosus-1a_F_contig1646.3656.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1646.3656.1
Unique NamemRNA_E-siliculosus-1a_F_contig1646.3656.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 843 bits (2179), Expect = 2.300e-309
Identity = 403/413 (97.58%), Postives = 408/413 (98.79%), Query Frame = 1 
Query:    1 MANLTNEARTQLKAAVRNFIENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLYQLNFQNLRYNPGLAPDISVIENFALSPAHATSIMETLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFQTAQLNEDTWPTYLQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINQVGSHMTHLWNWLISMTDHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGKMRCVAPQHPC 1239
            MANLTNEARTQLKAAVRNF+ENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLY+LNFQNLRYNPGLA DI+VIENFALSPAHATSIM+TLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGF TAQLNEDTWPTY QSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGIN VGSHMTHLWNWLISMTDHTETMSLPPLNYNS NTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAG+MRCVAPQHPC
Sbjct:    1 MANLTNEARTQLKAAVRNFMENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLYRLNFQNLRYNPGLASDIAVIENFALSPAHATSIMQTLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWLISMTDHTETMSLPPLNYNSVNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGRMRCVAPQHPC 413
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BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Match: D7G324_ECTSI (EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G324_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.020e-28
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:  769 DHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAE 1053
            DH +TM+LP LN NS NT ++VNKR+  R++AR+ L DFPPLPGPP+ TV   ARRARLRN Q QYL+THP I++GH +AP  VAERR +IRDAE
Sbjct:    2 DHAKTMALPLLNENSVNTAQVVNKRLQRREQARKILEDFPPLPGPPENTVQNVARRARLRNNQLQYLETHPEIYIGHAIAPGVVAERRAAIRDAE 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNP6_ESV1K2.300e-30997.58EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7G324_ECTSI1.020e-2864.21EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1646contigE-siliculosus-1a_F_contig1646:5248..6489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1242
Model size1242
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928153.1115997-CDS-E-siliculosus-1a_F_contig1646:5247..64891622928153.1115997-CDS-E-siliculosus-1a_F_contig1646:5247..6489Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 5248..6489 -
1696318825.7818847-CDS-E-siliculosus-1a_F_contig1646:5247..64891696318825.7818847-CDS-E-siliculosus-1a_F_contig1646:5247..6489Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1646 5248..6489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1646.3656.1prot_E-siliculosus-1a_F_contig1646.3656.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1646 5248..6489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1646.3656.1

>prot_E-siliculosus-1a_F_contig1646.3656.1 ID=prot_E-siliculosus-1a_F_contig1646.3656.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=414bp
MANLTNEARTQLKAAVRNFIENTPNVHSVNQHAKRASNTNTLMKYMSQTF
CSSGRPLHEGLYQLNFQNLRYNPGLAPDISVIENFALSPAHATSIMETLN
RRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIA
FSNRPSLVEGFQTAQLNEDTWPTYLQSMQGVVDNNHYGLPGNCMLYCTLV
GVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINQVGSHMTHLWN
WLISMTDHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPG
PPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDA
EVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTG
AGKMRCVAPQHPC*
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mRNA from alignment at E-siliculosus-1a_F_contig1646:5248..6489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1646.3656.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3656.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:5248..6489- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCAACCTGACCAACGAAGCACGGACACAGTTAAAGGCCGCCGTTAG
AAATTTCATCGAGAACACTCCGAACGTGCATTCTGTGAATCAACACGCTA
AACGTGCTTCGAACACCAATACGCTCATGAAGTACATGTCACAAACTTTT
TGCAGCTCCGGCCGTCCCTTACACGAAGGCCTTTACCAACTGAATTTCCA
GAATTTACGATATAATCCCGGGCTCGCGCCTGACATATCAGTGATTGAAA
ATTTCGCATTATCTCCTGCACATGCTACTTCCATCATGGAAACTTTAAAC
AGGAGGAGGGGCATCAGTGTCACATTCCTGCACGTGATGTCAACACAGCA
AAATTGTTCCCACGCATGTCTTATTCTGTTCGATGCTCGAACCAGAAAAC
AACACTTTTTCAATCCGGAGGCGCACGTGGGCTGCTGGTACAACATTGCC
TTCAGCAACAGACCTTCACTCGTTGAGGGCTTCCAAACCGCGCAACTGAA
CGAAGACACTTGGCCAACCTATTTGCAGTCAATGCAGGGTGTGGTGGATA
ATAATCACTACGGACTGCCTGGCAACTGCATGCTATACTGCACACTGGTG
GGCGTTTTGTGTACGCGTTTCGGCATAGGAAAGCCTAAGCTCATGGGTGA
GATGATCGTAGAGGCCCTTCAAGAAATTGATACGTACAACAATGTTGACG
TTCATCATGGTATAAATCAGGTGGGATCGCACATGACCCATCTCTGGAAT
TGGCTGATATCCATGACAGATCACACGGAGACAATGTCTCTACCTCCGCT
CAATTATAACTCAACAAACACCGAGGAGATGGTAAACAAGAGGATACACC
TCAGGGACAAAGCAAGACAATGTTTGCTGGATTTTCCACCTCTGCCAGGC
CCTCCGCAGTTCACGGTATCAGAAACGGCAAGAAGAGCTAGACTCCGAAA
CAGGCAGACGCAATACCTGCAGACACACCCCGTGATACACGTCGGGCATG
TCGTCGCCCCCGACACGGTCGCTGAGCGGCGCGAGTCGATCAGAGACGCC
GAGGTGCAGCTACTGAGGTTGATGTTTCCGCCAACGATTATGTGCAACGT
TGTTCTGCGTACGGGAAAGTTGTGCTCCAGAAGGGCGTGTGTCGGGCAGC
CCCTCTGTTGGCAACACAAATTCCTCACCAGAAATCACAGGCGCACGGGC
GCCGGTAAGATGAGGTGTGTCGCGCCGCAACACCCCTGCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1646:5248..6489-

>mRNA_E-siliculosus-1a_F_contig1646.3656.1 ID=mRNA_E-siliculosus-1a_F_contig1646.3656.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2484bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1646:5248..6489- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCAACCTGACCAACGAAGCACGGACACAGTTAAAGGCCGCCGTTAG
AAATTTCATCGAGAACACTCCGAACGTGCATTCTGTGAATCAACACGCTA
AACGTGCTTCGAACACCAATACGCTCATGAAGTACATGTCACAAACTTTT
TGCAGCTCCGGCCGTCCCTTACACGAAGGCCTTTACCAACTGAATTTCCA
GAATTTACGATATAATCCCGGGCTCGCGCCTGACATATCAGTGATTGAAA
ATTTCGCATTATCTCCTGCACATGCTACTTCCATCATGGAAACTTTAAAC
AGGAGGAGGGGCATCAGTGTCACATTCCTGCACGTGATGTCAACACAGCA
AAATTGTTCCCACGCATGTCTTATTCTGTTCGATGCTCGAACCAGAAAAC
AACACTTTTTCAATCCGGAGGCGCACGTGGGCTGCTGGTACAACATTGCC
TTCAGCAACAGACCTTCACTCGTTGAGGGCTTCCAAACCGCGCAACTGAA
CGAAGACACTTGGCCAACCTATTTGCAGTCAATGCAGGGTGTGGTGGATA
ATAATCACTACGGACTGCCTGGCAACTGCATGCTATACTGCACACTGGTG
GGCGTTTTGTGTACGCGTTTCGGCATAGGAAAGCCTAAGCTCATGGGTGA
GATGATCGTAGAGGCCCTTCAAGAAATTGATACGTACAACAATGTTGACG
TTCATCATGGTATAAATCAGGTGGGATCGCACATGACCCATCTCTGGAAT
TGGCTGATATCCATGACAGATCACACGGAGACAATGTCTCTACCTCCGCT
CAATTATAACTCAACAAACACCGAGGAGATGGTAAACAAGAGGATACACC
TCAGGGACAAAGCAAGACAATGTTTGCTGGATTTTCCACCTCTGCCAGGC
CCTCCGCAGTTCACGGTATCAGAAACGGCAAGAAGAGCTAGACTCCGAAA
CAGGCAGACGCAATACCTGCAGACACACCCCGTGATACACGTCGGGCATG
TCGTCGCCCCCGACACGGTCGCTGAGCGGCGCGAGTCGATCAGAGACGCC
GAGGTGCAGCTACTGAGGTTGATGTTTCCGCCAACGATTATGTGCAACGT
TGTTCTGCGTACGGGAAAGTTGTGCTCCAGAAGGGCGTGTGTCGGGCAGC
CCCTCTGTTGGCAACACAAATTCCTCACCAGAAATCACAGGCGCACGGGC
GCCGGTAAGATGAGGTGTGTCGCGCCGCAACACCCCTGCTAGATGGCCAA
CCTGACCAACGAAGCACGGACACAGTTAAAGGCCGCCGTTAGAAATTTCA
TCGAGAACACTCCGAACGTGCATTCTGTGAATCAACACGCTAAACGTGCT
TCGAACACCAATACGCTCATGAAGTACATGTCACAAACTTTTTGCAGCTC
CGGCCGTCCCTTACACGAAGGCCTTTACCAACTGAATTTCCAGAATTTAC
GATATAATCCCGGGCTCGCGCCTGACATATCAGTGATTGAAAATTTCGCA
TTATCTCCTGCACATGCTACTTCCATCATGGAAACTTTAAACAGGAGGAG
GGGCATCAGTGTCACATTCCTGCACGTGATGTCAACACAGCAAAATTGTT
CCCACGCATGTCTTATTCTGTTCGATGCTCGAACCAGAAAACAACACTTT
TTCAATCCGGAGGCGCACGTGGGCTGCTGGTACAACATTGCCTTCAGCAA
CAGACCTTCACTCGTTGAGGGCTTCCAAACCGCGCAACTGAACGAAGACA
CTTGGCCAACCTATTTGCAGTCAATGCAGGGTGTGGTGGATAATAATCAC
TACGGACTGCCTGGCAACTGCATGCTATACTGCACACTGGTGGGCGTTTT
GTGTACGCGTTTCGGCATAGGAAAGCCTAAGCTCATGGGTGAGATGATCG
TAGAGGCCCTTCAAGAAATTGATACGTACAACAATGTTGACGTTCATCAT
GGTATAAATCAGGTGGGATCGCACATGACCCATCTCTGGAATTGGCTGAT
ATCCATGACAGATCACACGGAGACAATGTCTCTACCTCCGCTCAATTATA
ACTCAACAAACACCGAGGAGATGGTAAACAAGAGGATACACCTCAGGGAC
AAAGCAAGACAATGTTTGCTGGATTTTCCACCTCTGCCAGGCCCTCCGCA
GTTCACGGTATCAGAAACGGCAAGAAGAGCTAGACTCCGAAACAGGCAGA
CGCAATACCTGCAGACACACCCCGTGATACACGTCGGGCATGTCGTCGCC
CCCGACACGGTCGCTGAGCGGCGCGAGTCGATCAGAGACGCCGAGGTGCA
GCTACTGAGGTTGATGTTTCCGCCAACGATTATGTGCAACGTTGTTCTGC
GTACGGGAAAGTTGTGCTCCAGAAGGGCGTGTGTCGGGCAGCCCCTCTGT
TGGCAACACAAATTCCTCACCAGAAATCACAGGCGCACGGGCGCCGGTAA
GATGAGGTGTGTCGCGCCGCAACACCCCTGCTAG
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