prot_E-siliculosus-1a_F_contig1646.3656.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1646.3656.1
Unique Nameprot_E-siliculosus-1a_F_contig1646.3656.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length414
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 843 bits (2179), Expect = 2.300e-309
Identity = 403/413 (97.58%), Postives = 408/413 (98.79%), Query Frame = 0 
Query:    1 MANLTNEARTQLKAAVRNFIENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLYQLNFQNLRYNPGLAPDISVIENFALSPAHATSIMETLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFQTAQLNEDTWPTYLQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINQVGSHMTHLWNWLISMTDHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGKMRCVAPQHPC 413
            MANLTNEARTQLKAAVRNF+ENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLY+LNFQNLRYNPGLA DI+VIENFALSPAHATSIM+TLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGF TAQLNEDTWPTY QSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGIN VGSHMTHLWNWLISMTDHTETMSLPPLNYNS NTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAG+MRCVAPQHPC
Sbjct:    1 MANLTNEARTQLKAAVRNFMENTPNVHSVNQHAKRASNTNTLMKYMSQTFCSSGRPLHEGLYRLNFQNLRYNPGLASDIAVIENFALSPAHATSIMQTLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPSLVEGFHTAQLNEDTWPTYQQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWLISMTDHTETMSLPPLNYNSVNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGRMRCVAPQHPC 413
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Match: D7G324_ECTSI (EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G324_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.020e-28
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 0 
Query:  257 DHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAE 351
            DH +TM+LP LN NS NT ++VNKR+  R++AR+ L DFPPLPGPP+ TV   ARRARLRN Q QYL+THP I++GH +AP  VAERR +IRDAE
Sbjct:    2 DHAKTMALPLLNENSVNTAQVVNKRLQRREQARKILEDFPPLPGPPENTVQNVARRARLRNNQLQYLETHPEIYIGHAIAPGVVAERRAAIRDAE 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1646.3656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNP6_ESV1K2.300e-30997.58EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7G324_ECTSI1.020e-2864.21EsV-1-13 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1646contigE-siliculosus-1a_F_contig1646:5248..6489 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1646.3656.1mRNA_E-siliculosus-1a_F_contig1646.3656.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1646 5248..6489 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1646.3656.1 ID=prot_E-siliculosus-1a_F_contig1646.3656.1|Name=mRNA_E-siliculosus-1a_F_contig1646.3656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=414bp
MANLTNEARTQLKAAVRNFIENTPNVHSVNQHAKRASNTNTLMKYMSQTF
CSSGRPLHEGLYQLNFQNLRYNPGLAPDISVIENFALSPAHATSIMETLN
RRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIA
FSNRPSLVEGFQTAQLNEDTWPTYLQSMQGVVDNNHYGLPGNCMLYCTLV
GVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINQVGSHMTHLWN
WLISMTDHTETMSLPPLNYNSTNTEEMVNKRIHLRDKARQCLLDFPPLPG
PPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDA
EVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTG
AGKMRCVAPQHPC*
back to top