mRNA_E-siliculosus-1a_M_contig992.17799.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig992.17799.1
Unique NamemRNA_E-siliculosus-1a_M_contig992.17799.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig992.17799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig992contigE-siliculosus-1a_M_contig992:666..1119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size315
Model size454
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.773029-CDS-E-siliculosus-1a_M_contig992:665..9801622936583.773029-CDS-E-siliculosus-1a_M_contig992:665..980Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig992 666..980 +
1696251142.7881207-CDS-E-siliculosus-1a_M_contig992:665..9801696251142.7881207-CDS-E-siliculosus-1a_M_contig992:665..980Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig992 666..980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.800378-UTR-E-siliculosus-1a_M_contig992:980..11191622936583.800378-UTR-E-siliculosus-1a_M_contig992:980..1119Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig992 981..1119 +
1696251142.800533-UTR-E-siliculosus-1a_M_contig992:980..11191696251142.800533-UTR-E-siliculosus-1a_M_contig992:980..1119Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig992 981..1119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig992.17799.1prot_E-siliculosus-1a_M_contig992.17799.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig992 666..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig992.17799.1

>prot_E-siliculosus-1a_M_contig992.17799.1 ID=prot_E-siliculosus-1a_M_contig992.17799.1|Name=mRNA_E-siliculosus-1a_M_contig992.17799.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=105bp
RVTWVLRGNSSDYCDSIVSFTSIYSTLLCVALLPVVQDICQIFLWVGRLR
EWRRCTIHVFDAIIFVCFLADRHRGATVRCVARFVRRVHGAGCARSVAGA
VLRS*
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mRNA from alignment at E-siliculosus-1a_M_contig992:666..1119+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig992.17799.1 ID=mRNA_E-siliculosus-1a_M_contig992.17799.1|Name=mRNA_E-siliculosus-1a_M_contig992.17799.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=454bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig992:666..1119+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCGTCACGTGGGTGTTGCGTGGGAATTCATCCGATTATTGCGACTCAAT
CGTTTCTTTTACGTCGATTTATTCAACATTGTTGTGTGTTGCCCTTCTAC
CAGTTGTTCAAGATATTTGTCAGATTTTCCTTTGGGTCGGACGATTGAGA
GAATGGAGACGGTGCACCATTCACGTGTTTGATGCTATTATTTTTGTTTG
TTTCTTAGCTGATAGGCACCGAGGGGCAACGGTTCGCTGCGTTGCTCGTT
TTGTTCGTCGGGTCCATGGGGCAGGGTGCGCTCGTTCCGTTGCAGGTGCA
GTGTTACGGTCTTGAAGTCGTATGCAGATGACACCTCCTTGTTTTGTTAT
TAGCTTTTCTTCCACCCTGGGTTGATCAGGAAGCATCCGAAGAGAAGGAG
GTCACTCTTGGATGTCTGGGTTGGCTTCCACTGATAGGGGAAACGTGATT
GATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig992:666..1119+

>mRNA_E-siliculosus-1a_M_contig992.17799.1 ID=mRNA_E-siliculosus-1a_M_contig992.17799.1|Name=mRNA_E-siliculosus-1a_M_contig992.17799.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig992:666..1119+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGCGTCACGTGGGTGTTGCGTGGGAATTCATCCGATTATTGCGACTCAAT
CGTTTCTTTTACGTCGATTTATTCAACATTGTTGTGTGTTGCCCTTCTAC
CAGTTGTTCAAGATATTTGTCAGATTTTCCTTTGGGTCGGACGATTGAGA
GAATGGAGACGGTGCACCATTCACGTGTTTGATGCTATTATTTTTGTTTG
TTTCTTAGCTGATAGGCACCGAGGGGCAACGGTTCGCTGCGTTGCTCGTT
TTGTTCGTCGGGTCCATGGGGCAGGGTGCGCTCGTTCCGTTGCAGGTGCA
GTGTTACGGTCTTGACGCGTCACGTGGGTGTTGCGTGGGAATTCATCCGA
TTATTGCGACTCAATCGTTTCTTTTACGTCGATTTATTCAACATTGTTGT
GTGTTGCCCTTCTACCAGTTGTTCAAGATATTTGTCAGATTTTCCTTTGG
GTCGGACGATTGAGAGAATGGAGACGGTGCACCATTCACGTGTTTGATGC
TATTATTTTTGTTTGTTTCTTAGCTGATAGGCACCGAGGGGCAACGGTTC
GCTGCGTTGCTCGTTTTGTTCGTCGGGTCCATGGGGCAGGGTGCGCTCGT
TCCGTTGCAGGTGCAGTGTTACGGTCTTGA
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