mRNA_E-siliculosus-1a_M_contig99.17755.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17755.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17755.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 464 bits (1193), Expect = 1.710e-155
Identity = 362/398 (90.95%), Postives = 365/398 (91.71%), Query Frame = 1 
Query:   79 MGDDLGDDWGVEGLDSGDEGTSTAAAXXXVAPKEATKTKNKTNXXXXXXXXXXXXXXXXXXLAGRKRGRSQLSPEGFEETDSSEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT----KTGDGGEQGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA-SXXXXXXXXXXXXXXXXXXXXXXXPQGKEAATGQL-RIALY 1254
            MGDDLGDDWGVEGLDSGDEGTSTA  XXX              XXXXXXXXXXXXXX    LAGRKRGRSQLSPEGFEETDSS+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      KTGDGGE+GAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVC GARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALV+LDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA S XXXXXXXXXXXXXXXXXXXXXXPQ K AATGQL RIALY
Sbjct:    1 MGDDLGDDWGVEGLDSGDEGTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----LAGRKRGRSQLSPEGFEETDSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGDGGERGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSAPSGXXXXXXXXXXXXXXXXXXXXXXPQEKGAATGQLLRIALY 394
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.530e-45
Identity = 103/225 (45.78%), Postives = 138/225 (61.33%), Query Frame = 1 
Query:  532 QGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRI-----QNRNSNA--------PRG-----------SPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA 1134
            +G+  A+A+T   ++ A+ +W R C V G  +  +EL  PW+ A  +A +E FGAHT  KL G+IKA+LP+W+        ++R S          PRG           SP ++IVC+GARRC+EV+K L+ FRCQV+KLFAKHLK  EQ  MLR+  FP+ VGTPGR+  LAA G++ L  + L+LLD  ++ KGRSVLDM G   D    L   VRPHL SA
Sbjct:  113 RGSSDASALT--AQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRSA 334
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK)

HSP 1 Score: 142 bits (358), Expect = 3.580e-35
Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 1 
Query:  592 WARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQ---------NRNSNAP--RGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCV 1113
            WA++  V G  +T LEL    +  G+   V    A     LV F+KA +P WK ++Q          R + AP  RGSP VL+VCAGARRCV ++K L  FRC V KLFAKH+KI+EQ+ +L+K C P+ VGTP R+  LA  G L L+S+ L++ D+ K+VK  ++LD++GV  D M F    V
Sbjct:   12 WAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLMDFFKTTV 191
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A067BQF7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC)

HSP 1 Score: 117 bits (293), Expect = 1.160e-25
Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLV 1128
            + K  GD +TP E+    +T      ++ FG HT      F++A  P+WK   + +     R SP +LIVC+ A R VE+ K + +F+C V KLFAKHLK+EEQ  ML++   P+ +GTPGR++ L    +L L+ ++ V+LD+  + K  S+L++   S DT+    DC+R  L+
Sbjct:   92 YMKHYGDSLTPAEIA-DGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIKDKR-SPLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTI----DCIRESLL 260
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A2D4C5F1_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN)

HSP 1 Score: 117 bits (293), Expect = 2.210e-25
Identity = 64/175 (36.57%), Postives = 99/175 (56.57%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
            + K RG  +T LE+    +T       +G G HT   L  +++  +P WK   + +     + SP  LIVC+ A R VEV+KHL++FRC+V KLFA+H+K +EQ+  L     P+ VGTP R++ L    ++ L  ++ V+LD+ K+ K  ++LD+   S DTM  L   + P L
Sbjct:  121 YIKHRGGQLTTLEIA-EGLTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDK-SPIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A485LER4_9STRA (Aste57867_20262 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LER4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.500e-25
Identity = 65/178 (36.52%), Postives = 102/178 (57.30%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA 1134
            + K+ GD +TPLE+    +     A V  FG H    L  F+++  P WK   + +     + SP +LIVC+ A R VEV K +  F+C V KLFAKHLK+ EQ   L++   P+ +GTPGR++ L    +L L+ +  V+LD+ ++ K  S+L++   + DT+    DC+R H++ A
Sbjct:   99 YAKLYGDNLTPLEIA-NGLVESHFATVPNFGKHNLDSLSRFLRSLCPKWKLLFKGKGIKDKK-SPILLIVCSSALRAVEVGKAIAVFKCHVAKLFAKHLKLSEQVDNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMYRDSKNMSILELKDTAKDTV----DCIREHMLPA 269
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.120e-25
Identity = 66/175 (37.71%), Postives = 96/175 (54.86%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
            + K RG  +T LEL    +T       +G G H   +L  +I   LP +KK    +     + SP  LI+C+ A RCV+V+KHLT F+C+V KLFAKHLK++EQ   L     P+ VGTP R++ L   G+L L  +  V+ D+EK+ K  +VL++   + + M  L     P L
Sbjct:  102 YTKHRGGQMTSLELA-DGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKGKRRDK-SPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A6G0WCP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.860e-24
Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 1131
            + K+ GD +TP E+    +T   +  V  FG HT   L  F+++  P WK   + +     + SP ++IVCA A R VEV K L +F+C V KLF KH+K+ EQ   L++   P+ +GTPGR++ L    +L L+ +  V+LD+ ++ K  S+L++   S DT+    D +R HL++
Sbjct:  107 YTKMYGDNLTPHEIA-NGLTEAHMTVVPNFGKHTLESLSRFLRSICPAWKSLFKGKGIKY-KASPILIIVCASALRAVEVGKALASFKCHVAKLFGKHIKVSEQVQNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMHRDSKEMSILELKDTSKDTI----DIIRDHLLT 276
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A1V9YC79_9STRA (Ubiquitin-specific protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC79_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.970e-23
Identity = 59/177 (33.33%), Postives = 97/177 (54.80%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 1131
            + K   D +TP E+    +T      ++ FG H    L  F++A  P+WK   + +     + SP +LIVC+ A R VE+ K +  F+C V KLF KHLK+EEQ   L++   P+ +GTPGR++ L     L L+ +  V++D+ ++ K  S+L++   S D +  + D + P L +
Sbjct:   93 YMKHYSDNLTPAEIA-NGLTESHFTEIKQFGKHNLDSLTRFLRALCPEWKFAFKGKGIK-DKSSPILLIVCSSALRAVEIGKAIAGFKCHVAKLFGKHLKLEEQVENLKRW-HPIAIGTPGRIKTLLEMKGLSLECTTHVVVDMHRDSKNMSILELKDTSKDMIDCIRDSMLPRLTT 266
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL)

HSP 1 Score: 110 bits (275), Expect = 4.170e-23
Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1 
Query:  601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
            + K RG  +T LEL    +         G G HT   L  +++   P WK   + +     + S   L++C+ A R VEV+KH  +F+C+V KLFAKH+K+E+Q++ L K   P+ VGTPGR++ L    +L L+ +  V +D+EK+ K  ++L++   + + M  L   + P L
Sbjct:  109 YIKQRGGQMTTLELA-EGLAESHFVAPAGLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDK-STYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI26_ECTSI1.710e-15590.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSW0_9STRA1.530e-4545.78U3-containing 90S pre-ribosomal complex subunit-do... [more]
A0A7S3XUU3_HETAK3.580e-3544.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067BQF7_SAPPC1.160e-2537.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4C5F1_PYTIN2.210e-2536.57Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A485LER4_9STRA2.500e-2536.52Aste57867_20262 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3I4I1_9STRA7.120e-2537.71Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6G0WCP8_9STRA1.860e-2436.16Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YC79_9STRA3.970e-2333.33Ubiquitin-specific protease n=1 Tax=Achlya hypogyn... [more]
A0A8K1CKQ2_PYTOL4.170e-2333.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:145776..151046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1257
Model size2066
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.19.12
EggNOG OGsKOG3089@1,KOG3089@2759
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
KEGG koko:K11858,ko:K14784
Preferred nameCMSS1
Seed eggNOG ortholog2880.D7FI26
Seed ortholog evalue1e-128
Seed ortholog score466.8
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936572.263396-UTR-E-siliculosus-1a_M_contig99:145775..1465841622936572.263396-UTR-E-siliculosus-1a_M_contig99:145775..146584Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 145776..146584 -
1696251136.9678571-UTR-E-siliculosus-1a_M_contig99:145775..1465841696251136.9678571-UTR-E-siliculosus-1a_M_contig99:145775..146584Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 145776..146584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936572.2776463-CDS-E-siliculosus-1a_M_contig99:146584..1468931622936572.2776463-CDS-E-siliculosus-1a_M_contig99:146584..146893Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 146585..146893 -
1696251136.9784484-CDS-E-siliculosus-1a_M_contig99:146584..1468931696251136.9784484-CDS-E-siliculosus-1a_M_contig99:146584..146893Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 146585..146893 -
1622936572.2939079-CDS-E-siliculosus-1a_M_contig99:147651..1477621622936572.2939079-CDS-E-siliculosus-1a_M_contig99:147651..147762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 147652..147762 -
1696251136.9869316-CDS-E-siliculosus-1a_M_contig99:147651..1477621696251136.9869316-CDS-E-siliculosus-1a_M_contig99:147651..147762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 147652..147762 -
1622936572.3119652-CDS-E-siliculosus-1a_M_contig99:148392..1484991622936572.3119652-CDS-E-siliculosus-1a_M_contig99:148392..148499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 148393..148499 -
1696251136.9952834-CDS-E-siliculosus-1a_M_contig99:148392..1484991696251136.9952834-CDS-E-siliculosus-1a_M_contig99:148392..148499Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 148393..148499 -
1622936572.3307586-CDS-E-siliculosus-1a_M_contig99:149158..1494411622936572.3307586-CDS-E-siliculosus-1a_M_contig99:149158..149441Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 149159..149441 -
1696251137.0061674-CDS-E-siliculosus-1a_M_contig99:149158..1494411696251137.0061674-CDS-E-siliculosus-1a_M_contig99:149158..149441Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 149159..149441 -
1622936572.3486671-CDS-E-siliculosus-1a_M_contig99:149799..1500831622936572.3486671-CDS-E-siliculosus-1a_M_contig99:149799..150083Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 149800..150083 -
1696251137.0171702-CDS-E-siliculosus-1a_M_contig99:149799..1500831696251137.0171702-CDS-E-siliculosus-1a_M_contig99:149799..150083Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 149800..150083 -
1622936572.3643398-CDS-E-siliculosus-1a_M_contig99:150883..1510461622936572.3643398-CDS-E-siliculosus-1a_M_contig99:150883..151046Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 150884..151046 -
1696251137.029164-CDS-E-siliculosus-1a_M_contig99:150883..1510461696251137.029164-CDS-E-siliculosus-1a_M_contig99:150883..151046Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 150884..151046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17755.1prot_E-siliculosus-1a_M_contig99.17755.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 146585..151046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17755.1

>prot_E-siliculosus-1a_M_contig99.17755.1 ID=prot_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=419bp
MCASNPAPGTHTAVAAALAWESSSGSMGDDLGDDWGVEGLDSGDEGTSTA
AATAAVAPKEATKTKNKTNNNNNKKKKNDDSSSSTTTLAGRKRGRSQLSP
EGFEETDSSEGDGEEEEEQDEESRLKAAEEEEARLRRAEKKKQKLKAFKA
KLKEKKKQRSQEESSAPAATKTGDGGEQGAKTAAAVTNTVEEEAEELWAR
FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWK
KRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLK
IEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKG
RSVLDMDGVSGDTMAFLSDCVRPHLVSASSGGGGGGVGGSGKKKKGGGGG
GGPQGKEAATGQLRIALY*
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mRNA from alignment at E-siliculosus-1a_M_contig99:145776..151046-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17755.1 ID=mRNA_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5271bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:145776..151046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGTGCGTCCAACCCGGCACCCGGCACCCACACAGCAGTAGCAGCTGC
TTTGGCGTGGGAGAGCTCGAGCGGAAGTATGGGAGACGACCTCGGTGATG
ATTGGGGGGTGGAAGGGCTTGACTCCGGCGATGAAGGCACCTCCACGGCG
GCTGCCACTGCGGGTAAGACGACGGCGGTGGCTGATGATACACCTTCACC
ACGAAAATGCGGTGCAACTCCTCTCCCGTACTGCTTTACTGCGTACTGCG
CGGCTCTCCCTGCTGTCGCTGTGGGCGTTGGCTGTGGCCAACGGCAGCAC
ATCTCCCAGTTAACAGCCGTCCCATAAGTGTTGAACGGCCACCCCTTTCA
AGCGTTCCTGTCTCGAGCATCTCGTTCTAGACATATACCCCTTCATTGAT
GCCGCTGTGTAGGAGACACCACTCCAGTGCTTTACACCACATCCCCGCCC
ACCACACAACTCAACGTCTTCTTTTGGCCGCATGGCGACCAAGACATGCA
GTGCCGTCAGAGCTACAACCTTGGCACACCAGGAAACGTAGAGACTGGGT
GTGACAGTGTCTAGCGTCAACCAAGATTCGGTGATGCAGTCTTTCCCTGT
GCCCCTGCTGTGCGAGTCTCTTGGATGCACACCTGCTAAGACGGATGGCA
TGATATGTAGAGGTAGACTACGTAACATAGTAGACTAGTCGTTGTTGCCC
AAGGTTCTCATTTCTTCCACGCTGAACAGCTGCAAGTTGAGGTGAGGAGG
ATTCCCGCGCACCTACAGCAGTTATTGCCTGTTCACACACAGGAAGTCAA
TGCCTGCTGTATGACCTTGTGAAAGTGGTGGATGATAGGCATTATTGCTC
AAATACCTGTCTTCATTGCACCTCGATCCCTACCCCCCCTCCCCTTCTCT
CTCTCGCTCTCTCCCTCTCTCTTCACCCGCTCCCTCCACCCCTTTCTCAC
GGCCTTTCGGCAGCAGTCGCGCCCAAGGAAGCAACCAAGACGAAAAACAA
GACCAACAACAACAACAATAAGAAAAAGAAGAACGACGACAGCAGCAGCA
GCACAACCACTCTCGCCGGGCGAAAGCGCGGCAGGTCCCAGCTCAGCCCA
GAGGGCTTCGAGGAGACGGACAGCAGCGAGGGCGACGGGGAGGAGGAGGA
GGAGCAGGACGAGGAGTCTAGGCTGAAGGCGGCAGAGGAGGAAGAGGCGA
GGCTCAGGCGCGCAGAGAAGAAGAAGCAGAAGCTAAAGGCGTTCAAGGTA
AAGTTGTGGTGTGTCGCGGCCTACGACTGCACCGAAACGGCAGGGGGTGT
GAGTCGCCCCCCCCCCCCGCCGACGCCGACGCCGACGCCGCCCGAGGTCT
TCTTTTGCACGCGTTAATCTCATTCGTAATAACGTGATTGGGCGAGCAAA
GGATACGACGATAGCGGGTAAGATCTCTCTTTCTCCTTTCGCTTCAAGTG
AACGTGTTCCACCCTGCCACTGCGGCCTACTGCTGCGCTTTCTCTCATCG
CTACAAATGAACATTCCCCCCCACTTGCCACTGCTTCTGCTGCTGCCTTC
CGTTTACTCAACTTTTCGTTTTTTTCGTCAACGCTTGCCAACGATTCATC
CGAAGGCGAAGTTGAAGGAGAAAAAGAAACAGAGATCCCAGGAGGAATCT
TCGGCACCGGCGGCGACCAAAACCGGAGATGGGGGGGAACAGGGGGCAAA
AACGGCGGCAGCGGTGACCAACACCGTCGAGGAGGAGGCCGAAGAGCTGT
GGGCCAGGTTTTGTAAGGTCCGGGGAGATCTGGTGACCCCGCTGGAGCTC
GACTTTCCGTGGATCACCGCTGGGTCGCTGGCTCGGGTCGAAGGGTTCGG
GGCGCACACCGCCATGAAGCTCGTCGGGTTTATCAAGGGTGCGCTTTTTC
TTGCTCTGCCTGCTTTGCTTTGCTTTGCTCTGTGTTGCTGCTACTGTATG
TGTGTGTCTTCTGTCACCATCAACCGTGCTGCAATCTGGGCGACAATGTG
AACAGACATCAGTCTCAGTGCGGCTGAAAGCAGGAAAATGCGCGCACGCG
CGTGTGTGTGTACGTGTTTCTTTTGTTGGAGTCGACCGCGCTACAAAACA
AGACACCAGGTGGCCAATGCCGAAAGCACGCCGGTCGTGCGGTTTTTTGG
CGTAAAACTACTGCTGTAACCCAAGTACGCCGTCTGCAGTGTTGTCGGGC
TCCCCTGATGGCAAGCAATGTGGCCGTGTATGTTTTTCTCGGCTCTTTTA
CTCATGTGCGTTCTCGCTCTCTCTCCGTGCCTGGACGGACCAGCGGTGTG
CGTGCTGTGAATGCAACACCCGGGCGCTCTGCTCCTGCTTTTTTTTTTAG
GACATGCGGATGGCGAGAATTGTGTCTGAACGCTTGTCTGTCTCTCCACC
TCTGTGTGGTGTGTATGTGTGTATGTTTTTTCCTTTCGAGGCATACGAAC
CCGAATTGGCCCCGACCCTTGCCACCAACTTTTTTCTGCCCCCGCCTTCC
TTCCTTCCTTCCTTCCTTCCCCCCATCGTCGTCGTCCACAATCGCAGCGT
CCCTCCCAGACTGGAAGAAGAGAATACAGAACAGAAACAGCAACGCCCCC
AGAGGAAGCCCGTCGGTGCTCATCGTCTGCGCGGGCGCGCGGCGCTGTGT
CGAGGTACAGTAGATACATGTCCGTACACCGGGGTGTGTGTCGTGGGTAC
GATGGGCATGGGGTTTACCACCTAAGTCTCTTTGTGTAACAATGGAACTA
CAACTGTTGAACGAGTTTCTTCCGTGGCCTTACGAAGAGAGGGGGGGGAA
AGAGTATCGGCGAGAAAAGGGGTGGGTGTGTGTGCGGTTGCCATGCTCCT
GCAGCCGAAGGTCGACCAGAGAACGGTACAAGAGGGACCCCTAAGGTAGG
GCAGACCCTGAATCCTAGGCAGGGCGGGTTACCATGTCACGACACGGCAG
CGGGCGAAGCTTTCGGAGAGTGGGGGGTGATTGTGAACGTGTTTAGTTTG
GTCAGAGGCGTGCTGGTGAGGGATTATCTCTTGTTTGAAAAACGTTGTCT
GCATACCATCCACCCATGCACCCCCTTCTCCTCCGTTCGTTATTTTTTTT
TTTCATCCGGCGGACCCCTGTCCCGCATCACACAAACGGTAAATAACCCG
GTGTCTTTTCGTTCCGTTCTCCATCGCCTTCCGCCTACAGTAATCTTGGA
CTTATTTCTTTTGACCCATGTCCCGCCCTCGGACTAACCGAACTCTGCTG
CTTTTTTTCGCTGCCTGTCTCTAACCTGCTACAGGTGATGAAACACCTGA
CGGCCTTTCGGTGCCAGGTGGTGAAGCTGTTCGCGAAGCACCTCAAGATC
GAGGAGCAAAAGGTCATGCTCAGGAAAGGATGTTTCCCGCTCGGGGTAAG
CACGCGGGCGTGTGTGAAGGGAGGGGGGGGGGTGGGGATGATTGCAAGCA
GCCCCTGGAAGCCGTTATTTTCTTTCGTGAAATATGTGGTGGTATTCATT
TTGTGTATAAGTTTTTTGCTGCGGTGTTTGTCACAAGGCACAGACAGCAG
CGGTTGCTGATAACAGAAAATCGATTGTTGTCGAACCTCAACGCAAGGAT
TAGGTAGGGTGGGTATCAGCGTACGAGTCTCGGGCTTGACGTCTCTGTTA
TGCGTCCGCGTGACGCGCTGTGCCTTGTCCGTTTCTGTTGTAGGGGGGCC
GGCGTTGTCGTGAGCGCTTCATGATCCACAATACAAACAGCCGGGCTTTG
TTTGTTGCCGGTTCTTCGACATGGATGATGGTGCACAACGTAGATCACAC
CGTCTTGTTGGGTTTCGCCAACGCTCTCGAAATCGATCCTAGGTCCGGTT
CAAGTGTCCTCGTTGTTCCTCAATGCCCTTACATTTCTCTCATATTTTTG
TACCATGTTTCTCGAAGTTTTTGTTCGCCTTGTTACAAGTGCTTGTTCTT
TTTCCTGTGACACCGTGTTTCCGTTGTTTCTTCCGTTGTTTCTTCCGTTG
TTTTTGGTGGAATCGGTCAATCGAACGGGGTTCACCTTATAATATCCCTT
GTTCTTTTGCGCTGTATTTCTTGTGATGCATTTTCCCGTAACGTCTTCCG
CTTTTTTTTTTATGGTTGGAATCGATCCGCTGCTGCTGCTGTTGCTCCCA
CAGGTTGGAACTCCGGGACGCATGCGCGCGCTCGCCGCCGCCGGGTCTCT
CCGCCTGGACTCGTCGGCGCTGGTCCTCCTCGACCTCGAGAAGAACGTGA
AGGGCAGGAGCGTGCTGGACATGGACGGGGTTTCCGGGGACACGATGGCG
TTCCTCTCGGACTGCGTCCGCCCCCACCTGGTGTCGGCATCCAGCGGCGG
CGGCGGCGGCGGCGTTGGCGGTTCGGGAAAGAAAAAGAAGGGTGGCGGCG
GTGGTGGTGGTCCCCAGGGGAAAGAGGCTGCGACGGGGCAGCTGAGGATA
GCGCTGTACTGATGATCAAAGTTGAGGCTTGACGTGGTTGTTAATTGTAA
GCGTTGTAGCGCGGTCGTCGGGAAAGCGGCGTTGTTTTCGGAGCACGCGG
CTTTCGGTTGTTTTGGAAGCGTGCCGACGGGTCGGGGGCGTTGGGAGGCA
GTGGCGGCGGGAATGGGGTGCGGCTCCAAGGGGTGGTAAATCGTTCGTGC
AACGATACGTAGCGAGCGAACGCGGGGCTGGAAACGGCCGCGGCCAGAGA
CGCCGCGTTGGGAGGAACTTGACCCCTCGCTGGTGAGGCAGGCAGGGCGC
GCTTCGTTTCTGAGCTTGGCTTGAATTGTGTATCCCGATTGTCGCTTCTG
CTGTAATAGAAACAGCCGGGGCGTAGGGACCTACCAACTACCAACCAGTC
CTGTGTTTTTTTTCCGAGCCCAAGGGAGGGGGGAGTGATGGGAAGTCTTG
GGAGCGTCGACGATGCGGGGCGATTCGCCTGCAGCGGAAATGCGTCCTCA
TCCACCGTTCGTTGCCGACTTTGAATACCGTTGTGCGATTGGGGTAGCCC
TGTCTTTGGTTTGCCTTTGGGGTAGGTGTAGCAGGTGAATCCCGTTAAGA
CTTGACTTTTTTTTTAGAAAGGTTAGATAGTCTCACAGAAAGAAAGACTA
CCCTTTCGAGATACATATAACGACAGTCGAAAGGGCAGTGCAAAATATGT
TCAGTGATAGGAGGGAAATCGGCCGGAATCTGGGCTTTTTTTAGTTTATT
GTTATTTTCCTTGTGGCCCCCTCTCGGGCCTTCGGCGTTGTCATCCTTGC
GCGGGGGAAATGTATGGCGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:145776..151046-

>mRNA_E-siliculosus-1a_M_contig99.17755.1 ID=mRNA_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2514bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:145776..151046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTGTGCGTCCAACCCGGCACCCGGCACCCACACAGCAGTAGCAGCTGC
TTTGGCGTGGGAGAGCTCGAGCGGAAGTATGGGAGACGACCTCGGTGATG
ATTGGGGGGTGGAAGGGCTTGACTCCGGCGATGAAGGCACCTCCACGGCG
GCTGCCACTGCGGATGTGTGCGTCCAACCCGGCACCCGGCACCCACACAG
CAGTAGCAGCTGCTTTGGCGTGGGAGAGCTCGAGCGGAAGTATGGGAGAC
GACCTCGGTGATGATTGGGGGGTGGAAGGGCTTGACTCCGGCGATGAAGG
CACCTCCACGGCGGCTGCCACTGCGGCAGTCGCGCCCAAGGAAGCAACCA
AGACGAAAAACAAGACCAACAACAACAACAATAAGAAAAAGAAGAACGAC
GACAGCAGCAGCAGCACAACCACTCTCGCCGGGCGAAAGCGCGGCAGGTC
CCAGCTCAGCCCAGAGGGCTTCGAGGAGACGGACAGCAGCGAGGGCGACG
GGGAGGAGGAGGAGGAGCAGGACGAGGAGTCTAGGCTGAAGGCGGCAGAG
GAGGAAGAGGCGAGGCTCAGGCGCGCAGAGAAGAAGAAGCAGAAGCTAAA
GGCGTTCAAGCAGTCGCGCCCAAGGAAGCAACCAAGACGAAAAACAAGAC
CAACAACAACAACAATAAGAAAAAGAAGAACGACGACAGCAGCAGCAGCA
CAACCACTCTCGCCGGGCGAAAGCGCGGCAGGTCCCAGCTCAGCCCAGAG
GGCTTCGAGGAGACGGACAGCAGCGAGGGCGACGGGGAGGAGGAGGAGGA
GCAGGACGAGGAGTCTAGGCTGAAGGCGGCAGAGGAGGAAGAGGCGAGGC
TCAGGCGCGCAGAGAAGAAGAAGCAGAAGCTAAAGGCGTTCAAGGCGAAG
TTGAAGGAGAAAAAGAAACAGAGATCCCAGGAGGAATCTTCGGCACCGGC
GGCGACCAAAACCGGAGATGGGGGGGAACAGGGGGCAAAAACGGCGGCAG
CGGTGACCAACACCGTCGAGGAGGAGGCCGAAGAGCTGTGGGCCAGGTTT
TGTAAGGTCCGGGGAGATCTGGTGACCCCGCTGGAGCTCGACTTTCCGTG
GATCACCGCTGGGTCGCTGGCTCGGGTCGAAGGGTTCGGGGCGCACACCG
CCATGAAGCTCGTCGGGTTTATCAAGGGCGAAGTTGAAGGAGAAAAAGAA
ACAGAGATCCCAGGAGGAATCTTCGGCACCGGCGGCGACCAAAACCGGAG
ATGGGGGGGAACAGGGGGCAAAAACGGCGGCAGCGGTGACCAACACCGTC
GAGGAGGAGGCCGAAGAGCTGTGGGCCAGGTTTTGTAAGGTCCGGGGAGA
TCTGGTGACCCCGCTGGAGCTCGACTTTCCGTGGATCACCGCTGGGTCGC
TGGCTCGGGTCGAAGGGTTCGGGGCGCACACCGCCATGAAGCTCGTCGGG
TTTATCAAGGCGTCCCTCCCAGACTGGAAGAAGAGAATACAGAACAGAAA
CAGCAACGCCCCCAGAGGAAGCCCGTCGGTGCTCATCGTCTGCGCGGGCG
CGCGGCGCTGTGTCGAGCGTCCCTCCCAGACTGGAAGAAGAGAATACAGA
ACAGAAACAGCAACGCCCCCAGAGGAAGCCCGTCGGTGCTCATCGTCTGC
GCGGGCGCGCGGCGCTGTGTCGAGGTGATGAAACACCTGACGGCCTTTCG
GTGCCAGGTGGTGAAGCTGTTCGCGAAGCACCTCAAGATCGAGGAGCAAA
AGGTCATGCTCAGGAAAGGATGTTTCCCGCTCGGGGTGATGAAACACCTG
ACGGCCTTTCGGTGCCAGGTGGTGAAGCTGTTCGCGAAGCACCTCAAGAT
CGAGGAGCAAAAGGTCATGCTCAGGAAAGGATGTTTCCCGCTCGGGGTTG
GAACTCCGGGACGCATGCGCGCGCTCGCCGCCGCCGGGTCTCTCCGCCTG
GACTCGTCGGCGCTGGTCCTCCTCGACCTCGAGAAGAACGTGAAGGGCAG
GAGCGTGCTGGACATGGACGGGGTTTCCGGGGACACGATGGCGTTCCTCT
CGGACTGCGTCCGCCCCCACCTGGTGTCGGCATCCAGCGGCGGCGGCGGC
GGCGGCGTTGGCGGTTCGGGAAAGAAAAAGAAGGGTGGCGGCGGTGGTGG
TGGTCCCCAGGGGAAAGAGGCTGCGACGGGGCAGCTGAGGATAGCGCTGT
ACTGAGTTGGAACTCCGGGACGCATGCGCGCGCTCGCCGCCGCCGGGTCT
CTCCGCCTGGACTCGTCGGCGCTGGTCCTCCTCGACCTCGAGAAGAACGT
GAAGGGCAGGAGCGTGCTGGACATGGACGGGGTTTCCGGGGACACGATGG
CGTTCCTCTCGGACTGCGTCCGCCCCCACCTGGTGTCGGCATCCAGCGGC
GGCGGCGGCGGCGGCGTTGGCGGTTCGGGAAAGAAAAAGAAGGGTGGCGG
CGGTGGTGGTGGTCCCCAGGGGAAAGAGGCTGCGACGGGGCAGCTGAGGA
TAGCGCTGTACTGA
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