mRNA_E-siliculosus-1a_M_contig99.17755.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI) HSP 1 Score: 464 bits (1193), Expect = 1.710e-155 Identity = 362/398 (90.95%), Postives = 365/398 (91.71%), Query Frame = 1 Query: 79 MGDDLGDDWGVEGLDSGDEGTSTAAAXXXVAPKEATKTKNKTNXXXXXXXXXXXXXXXXXXLAGRKRGRSQLSPEGFEETDSSEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT----KTGDGGEQGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA-SXXXXXXXXXXXXXXXXXXXXXXXPQGKEAATGQL-RIALY 1254
MGDDLGDDWGVEGLDSGDEGTSTA XXX XXXXXXXXXXXXXX LAGRKRGRSQLSPEGFEETDSS+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KTGDGGE+GAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVC GARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALV+LDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA S XXXXXXXXXXXXXXXXXXXXXXPQ K AATGQL RIALY
Sbjct: 1 MGDDLGDDWGVEGLDSGDEGTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----LAGRKRGRSQLSPEGFEETDSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGDGGERGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSAPSGXXXXXXXXXXXXXXXXXXXXXXPQEKGAATGQLLRIALY 394
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.530e-45 Identity = 103/225 (45.78%), Postives = 138/225 (61.33%), Query Frame = 1 Query: 532 QGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRI-----QNRNSNA--------PRG-----------SPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA 1134
+G+ A+A+T ++ A+ +W R C V G + +EL PW+ A +A +E FGAHT KL G+IKA+LP+W+ ++R S PRG SP ++IVC+GARRC+EV+K L+ FRCQV+KLFAKHLK EQ MLR+ FP+ VGTPGR+ LAA G++ L + L+LLD ++ KGRSVLDM G D L VRPHL SA
Sbjct: 113 RGSSDASALT--AQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRSA 334
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK) HSP 1 Score: 142 bits (358), Expect = 3.580e-35 Identity = 82/185 (44.32%), Postives = 112/185 (60.54%), Query Frame = 1 Query: 592 WARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQ---------NRNSNAP--RGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCV 1113
WA++ V G +T LEL + G+ V A LV F+KA +P WK ++Q R + AP RGSP VL+VCAGARRCV ++K L FRC V KLFAKH+KI+EQ+ +L+K C P+ VGTP R+ LA G L L+S+ L++ D+ K+VK ++LD++GV D M F V
Sbjct: 12 WAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLMDFFKTTV 191
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A067BQF7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC) HSP 1 Score: 117 bits (293), Expect = 1.160e-25 Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLV 1128
+ K GD +TP E+ +T ++ FG HT F++A P+WK + + R SP +LIVC+ A R VE+ K + +F+C V KLFAKHLK+EEQ ML++ P+ +GTPGR++ L +L L+ ++ V+LD+ + K S+L++ S DT+ DC+R L+
Sbjct: 92 YMKHYGDSLTPAEIA-DGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIKDKR-SPLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTI----DCIRESLL 260
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A2D4C5F1_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN) HSP 1 Score: 117 bits (293), Expect = 2.210e-25 Identity = 64/175 (36.57%), Postives = 99/175 (56.57%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
+ K RG +T LE+ +T +G G HT L +++ +P WK + + + SP LIVC+ A R VEV+KHL++FRC+V KLFA+H+K +EQ+ L P+ VGTP R++ L ++ L ++ V+LD+ K+ K ++LD+ S DTM L + P L
Sbjct: 121 YIKHRGGQLTTLEIA-EGLTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDK-SPIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A485LER4_9STRA (Aste57867_20262 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LER4_9STRA) HSP 1 Score: 116 bits (291), Expect = 2.500e-25 Identity = 65/178 (36.52%), Postives = 102/178 (57.30%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSA 1134
+ K+ GD +TPLE+ + A V FG H L F+++ P WK + + + SP +LIVC+ A R VEV K + F+C V KLFAKHLK+ EQ L++ P+ +GTPGR++ L +L L+ + V+LD+ ++ K S+L++ + DT+ DC+R H++ A
Sbjct: 99 YAKLYGDNLTPLEIA-NGLVESHFATVPNFGKHNLDSLSRFLRSLCPKWKLLFKGKGIKDKK-SPILLIVCSSALRAVEVGKAIAVFKCHVAKLFAKHLKLSEQVDNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMYRDSKNMSILELKDTAKDTV----DCIREHMLPA 269
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA) HSP 1 Score: 115 bits (288), Expect = 7.120e-25 Identity = 66/175 (37.71%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
+ K RG +T LEL +T +G G H +L +I LP +KK + + SP LI+C+ A RCV+V+KHLT F+C+V KLFAKHLK++EQ L P+ VGTP R++ L G+L L + V+ D+EK+ K +VL++ + + M L P L
Sbjct: 102 YTKHRGGQMTSLELA-DGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKGKRRDK-SPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A6G0WCP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCP8_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.860e-24 Identity = 64/177 (36.16%), Postives = 102/177 (57.63%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 1131
+ K+ GD +TP E+ +T + V FG HT L F+++ P WK + + + SP ++IVCA A R VEV K L +F+C V KLF KH+K+ EQ L++ P+ +GTPGR++ L +L L+ + V+LD+ ++ K S+L++ S DT+ D +R HL++
Sbjct: 107 YTKMYGDNLTPHEIA-NGLTEAHMTVVPNFGKHTLESLSRFLRSICPAWKSLFKGKGIKY-KASPILIIVCASALRAVEVGKALASFKCHVAKLFGKHIKVSEQVQNLKR-FHPIAIGTPGRIKTLLEMKALSLECTTHVVLDMHRDSKEMSILELKDTSKDTI----DIIRDHLLT 276
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A1V9YC79_9STRA (Ubiquitin-specific protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC79_9STRA) HSP 1 Score: 110 bits (274), Expect = 3.970e-23 Identity = 59/177 (33.33%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVS 1131
+ K D +TP E+ +T ++ FG H L F++A P+WK + + + SP +LIVC+ A R VE+ K + F+C V KLF KHLK+EEQ L++ P+ +GTPGR++ L L L+ + V++D+ ++ K S+L++ S D + + D + P L +
Sbjct: 93 YMKHYSDNLTPAEIA-NGLTESHFTEIKQFGKHNLDSLTRFLRALCPEWKFAFKGKGIK-DKSSPILLIVCSSALRAVEIGKAIAGFKCHVAKLFGKHLKLEEQVENLKRW-HPIAIGTPGRIKTLLEMKGLSLECTTHVVVDMHRDSKNMSILELKDTSKDMIDCIRDSMLPRLTT 266
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL) HSP 1 Score: 110 bits (275), Expect = 4.170e-23 Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1 Query: 601 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVLLDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHL 1125
+ K RG +T LEL + G G HT L +++ P WK + + + S L++C+ A R VEV+KH +F+C+V KLFAKH+K+E+Q++ L K P+ VGTPGR++ L +L L+ + V +D+EK+ K ++L++ + + M L + P L
Sbjct: 109 YIKQRGGQMTTLELA-EGLAESHFVAPAGLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDK-STYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17755.1 >prot_E-siliculosus-1a_M_contig99.17755.1 ID=prot_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=419bp MCASNPAPGTHTAVAAALAWESSSGSMGDDLGDDWGVEGLDSGDEGTSTAback to top mRNA from alignment at E-siliculosus-1a_M_contig99:145776..151046- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17755.1 ID=mRNA_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5271bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:145776..151046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:145776..151046- >mRNA_E-siliculosus-1a_M_contig99.17755.1 ID=mRNA_E-siliculosus-1a_M_contig99.17755.1|Name=mRNA_E-siliculosus-1a_M_contig99.17755.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2514bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:145776..151046- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |