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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17744.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE) HSP 1 Score: 175 bits (444), Expect = 3.240e-54 Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1 Query: 4 LTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYWVGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLE--QPAGCSTSEQ 336
+TGSP+EH FEYVEHLN IALDCRESNL TSTTLHGNNLHMNR K ++WV GV GAA KAE +NRSQE YWNIVR LPPLPDFVFAFK KRPR+ RK+E QPAGC+T+EQ
Sbjct: 50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
BLAST of mRNA_E-siliculosus-1a_M_contig99.17744.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI) HSP 1 Score: 171 bits (433), Expect = 5.380e-53 Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 Query: 1 GLTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYWVGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLE--QPA 315
G GSPNE +F YVEHL+DIALDCRESNLRTSTT HGNNLHMNRLKR++ GVAGA RKAEEI+RSQEPYW IVR+LP LPDFVFAFK KRPR+LPRKLE QPA
Sbjct: 9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 339 |
| Model size | 339 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936569.9160755-CDS-E-siliculosus-1a_M_contig99:16657..16996 | 1622936569.9160755-CDS-E-siliculosus-1a_M_contig99:16657..16996 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig99 16658..16996 + |
| 1696251135.7806587-CDS-E-siliculosus-1a_M_contig99:16657..16996 | 1696251135.7806587-CDS-E-siliculosus-1a_M_contig99:16657..16996 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig99 16658..16996 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17744.1 >prot_E-siliculosus-1a_M_contig99.17744.1 ID=prot_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=113bp
GLTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYW
VGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRK
LEQPAGCSTSEQ* back to topmRNA from alignment at E-siliculosus-1a_M_contig99:16658..16996+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig99.17744.1 ID=mRNA_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=339bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:16658..16996+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGG
GTCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TCGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGCAACCTGCAGGGTGCTCAACGAGCGAGCAGTAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:16658..16996+ >mRNA_E-siliculosus-1a_M_contig99.17744.1 ID=mRNA_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:16658..16996+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGG
GTCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TCGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGCAACCTGCAGGGTGCTCAACGAGCGAGCAGTAAGGTTTGACAGG
CTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCTGAACGACATTG
CCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCACGTTGCACGGT
AACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGGGTCGGGGGCGT
AGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATCTCAGGAACCGT
ACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATTTCGTGTTCGCG
TTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAACTGGAGCAACC
TGCAGGGTGCTCAACGAGCGAGCAGTAA back to top
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