mRNA_E-siliculosus-1a_M_contig99.17744.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17744.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17744.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17744.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.240e-54
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1 
Query:    4 LTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYWVGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLE--QPAGCSTSEQ 336
            +TGSP+EH FEYVEHLN IALDCRESNL TSTTLHGNNLHMNR K ++WV GV GAA KAE +NRSQE YWNIVR LPPLPDFVFAFK  KRPR+  RK+E  QPAGC+T+EQ
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17744.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 5.380e-53
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 GLTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYWVGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLE--QPA 315
            G  GSPNE +F YVEHL+DIALDCRESNLRTSTT HGNNLHMNRLKR++   GVAGA RKAEEI+RSQEPYW IVR+LP LPDFVFAFK  KRPR+LPRKLE  QPA
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE3.240e-5476.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI5.380e-5379.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:16658..16996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size339
Model size339
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936569.9160755-CDS-E-siliculosus-1a_M_contig99:16657..169961622936569.9160755-CDS-E-siliculosus-1a_M_contig99:16657..16996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 16658..16996 +
1696251135.7806587-CDS-E-siliculosus-1a_M_contig99:16657..169961696251135.7806587-CDS-E-siliculosus-1a_M_contig99:16657..16996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 16658..16996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17744.1prot_E-siliculosus-1a_M_contig99.17744.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 16658..16996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17744.1

>prot_E-siliculosus-1a_M_contig99.17744.1 ID=prot_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=113bp
GLTGSPNEHKFEYVEHLNDIALDCRESNLRTSTTLHGNNLHMNRLKRSYW
VGGVAGAARKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRK
LEQPAGCSTSEQ*
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mRNA from alignment at E-siliculosus-1a_M_contig99:16658..16996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17744.1 ID=mRNA_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=339bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:16658..16996+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGG
GTCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TCGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGCAACCTGCAGGGTGCTCAACGAGCGAGCAGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:16658..16996+

>mRNA_E-siliculosus-1a_M_contig99.17744.1 ID=mRNA_E-siliculosus-1a_M_contig99.17744.1|Name=mRNA_E-siliculosus-1a_M_contig99.17744.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:16658..16996+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCT
GAACGACATTGCCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCA
CGTTGCACGGTAACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGG
GTCGGGGGCGTAGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATC
TCAGGAACCGTACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TCGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGCAACCTGCAGGGTGCTCAACGAGCGAGCAGTAAGGTTTGACAGG
CTCGCCCAACGAGCACAAGTTTGAGTACGTCGAGCACCTGAACGACATTG
CCCTAGACTGTCGCGAGAGTAATTTAAGGACTTCCACCACGTTGCACGGT
AACAATCTGCATATGAACAGGTTGAAGCGGTCCTATTGGGTCGGGGGCGT
AGCTGGCGCGGCACGCAAAGCGGAGGAAATAAATCGATCTCAGGAACCGT
ACTGGAATATCGTGCGTCTTCTGCCCCCGCTGCCTGATTTCGTGTTCGCG
TTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAACTGGAGCAACC
TGCAGGGTGCTCAACGAGCGAGCAGTAA
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