mRNA_E-siliculosus-1a_M_contig99.17795.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17795.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17795.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:607000..607613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size138
Model size140
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936569.3832488-CDS-E-siliculosus-1a_M_contig99:606999..6070851622936569.3832488-CDS-E-siliculosus-1a_M_contig99:606999..607085Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 607000..607085 +
1696251135.637063-CDS-E-siliculosus-1a_M_contig99:606999..6070851696251135.637063-CDS-E-siliculosus-1a_M_contig99:606999..607085Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 607000..607085 +
1622936569.402783-CDS-E-siliculosus-1a_M_contig99:607560..6076121622936569.402783-CDS-E-siliculosus-1a_M_contig99:607560..607612Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 607561..607612 +
1696251135.6475065-CDS-E-siliculosus-1a_M_contig99:607560..6076121696251135.6475065-CDS-E-siliculosus-1a_M_contig99:607560..607612Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 607561..607612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17795.1prot_E-siliculosus-1a_M_contig99.17795.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 607000..607612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17795.1

>prot_E-siliculosus-1a_M_contig99.17795.1 ID=prot_E-siliculosus-1a_M_contig99.17795.1|Name=mRNA_E-siliculosus-1a_M_contig99.17795.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=46bp
TPRTSSETTLTGLGPPTLGTYPGKRKVGRPTLMEGLHFVWNPRDQS
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mRNA from alignment at E-siliculosus-1a_M_contig99:607000..607613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17795.1 ID=mRNA_E-siliculosus-1a_M_contig99.17795.1|Name=mRNA_E-siliculosus-1a_M_contig99.17795.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=614bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:607000..607613+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGCCAAGAACTTCGTCTGAGACCACCCTTACCGGCCTCGGACCACCCAC
ACTCGGAACGTACCCCGGAAAACGGAAGGTAGGCAGGTATGTATGTCAAG
AGCCGGAGAGTACAGATTTTGGTAGATGGCACCGGGTGCGATCGGTTTCT
TGTCTTGTTCTGTTCTGTGAAGAGGCCACGCTGTCTTCGGTCCCTCTGAA
CCCAGTGCTTTCGGGCTCTGCACTCCCAGTCAGTGCTCCAATCTGTCAGT
GTTCCCGTTTGGCGCAGCATTCTGCACCTCGCGCGCTCACTCCCTCTTTG
TTTGCACTAATCGATCAGCAGTCTCATCCTCGCATGCTCCGCGCAACCAA
CAATTATTCGCGCTGTCATCCACGTGATCATTCATCCACTAGTTTCCGCG
AGCAGATATTTATACCCCATCCGCGTTCTGTGTCCCTCTCTTTCCGTGTC
AATTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTACTATCTCTCTCTCTCTACTATCTTTCTCTCTCATAATTCCT
GCTCAACTCAGGCCAACTCTTATGGAAGGTCTGCATTTTGTCTGGAACCC
ACGGGACCAGTCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:607000..607613+

>mRNA_E-siliculosus-1a_M_contig99.17795.1 ID=mRNA_E-siliculosus-1a_M_contig99.17795.1|Name=mRNA_E-siliculosus-1a_M_contig99.17795.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:607000..607613+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGCCAAGAACTTCGTCTGAGACCACCCTTACCGGCCTCGGACCACCCAC
ACTCGGAACGTACCCCGGAAAACGGAAGGTAGGCAGACGCCAAGAACTTC
GTCTGAGACCACCCTTACCGGCCTCGGACCACCCACACTCGGAACGTACC
CCGGAAAACGGAAGGTAGGCAGGCCAACTCTTATGGAAGGTCTGCATTTT
GTCTGGAACCCACGGGACCAGTCAGCCAACTCTTATGGAAGGTCTGCATT
TTGTCTGGAACCCACGGGACCAGTCA
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