Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
D1J7C0_ECTSI (Acetolactate synthase small subunit n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C0_ECTSI)
HSP 1 Score: 162 bits (410), Expect = 6.390e-49
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPLIEREL+LIKLKVNLIERTEILNLAQIFRF+ITDVT+STLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE
Sbjct: 78 DITYLPLIERELVLIKLKVNLIERTEILNLAQIFRFKITDVTDSTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A1I9LVF0_9PHAE (Acetolactate synthase small subunit n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVF0_9PHAE)
HSP 1 Score: 140 bits (354), Expect = 2.000e-40
Identity = 75/93 (80.65%), Postives = 88/93 (94.62%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL+EREL+LIKL+V+LIER EI NLAQIFRF+ITD+T+ST+ILEVTAD GKIAAL+K+LEKYNIL+L R+GRIALIRES VSTSSLKE
Sbjct: 78 DITYLPLVERELVLIKLQVSLIERAEISNLAQIFRFKITDITDSTIILEVTADQGKIAALQKILEKYNILELSRSGRIALIRESGVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A8F0F7F2_9PHAE (Acetolactate synthase small subunit n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7F2_9PHAE)
HSP 1 Score: 140 bits (352), Expect = 4.780e-40
Identity = 74/93 (79.57%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL++RELILIKL+V++ ER EILNLAQ+FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE
Sbjct: 78 DITYLPLVQRELILIKLQVSVTEREEILNLAQVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A6B7EYZ6_9PHAE (Acetolactate synthase small subunit n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYZ6_9PHAE)
HSP 1 Score: 139 bits (351), Expect = 5.710e-40
Identity = 74/93 (79.57%), Postives = 88/93 (94.62%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPLIEREL+L+KL+V+L+ERTEILNLAQIFRF+ITDVT+ST+ILE+TAD GK+AALEK+LEKY IL+L RTG IALIRESRVS+ SLKE
Sbjct: 78 DITYLPLIERELLLVKLQVSLLERTEILNLAQIFRFKITDVTDSTIILEITADQGKVAALEKLLEKYKILELCRTGGIALIRESRVSSLSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A516IDP2_9PHAE (Acetolactate synthase small subunit n=2 Tax=Lessonia TaxID=105411 RepID=A0A516IDP2_9PHAE)
HSP 1 Score: 138 bits (348), Expect = 1.820e-39
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL++REL+LIKL+VN+IER EIL LA IFRF+I D+TESTLI+EVTADPGKI AL+K+LEKYNILQL RTG IAL RES VSTSSLKE
Sbjct: 78 DITYLPLVQRELVLIKLQVNIIEREEILRLADIFRFKINDITESTLIIEVTADPGKIVALQKILEKYNILQLSRTGEIALTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A0S0G9Z6_COSCS (Acetolactate synthase small subunit n=19 Tax=Laminariales TaxID=2886 RepID=A0A0S0G9Z6_COSCS)
HSP 1 Score: 138 bits (347), Expect = 2.730e-39
Identity = 71/93 (76.34%), Postives = 87/93 (93.55%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL++RELILIKL+V++IER EI+NLA++FRF+ITD+TESTLILE+TADPGKI AL+K+L+KYNILQL RTG IAL RES V+TSSLKE
Sbjct: 78 DITYLPLVQRELILIKLQVSVIEREEIINLAEVFRFKITDITESTLILEITADPGKIVALQKILKKYNILQLSRTGEIALTRESSVNTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A0R6LUP2_UNDPI (Acetolactate synthase small subunit n=5 Tax=Alariaceae TaxID=2887 RepID=A0A0R6LUP2_UNDPI)
HSP 1 Score: 136 bits (343), Expect = 1.100e-38
Identity = 70/93 (75.27%), Postives = 86/93 (92.47%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL++REL+LIKL++++ ER EILNLA++FRF+ITD+TESTLILE+TADPGKI AL+K+LEKYNILQL RTG IA+ RES VSTSSLKE
Sbjct: 78 DITYLPLVQRELVLIKLQISVTEREEILNLAKVFRFKITDITESTLILELTADPGKIVALQKILEKYNILQLSRTGEIAVTRESSVSTSSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A8F0F9Y8_9PHAE (Acetolactate synthase small subunit n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Y8_9PHAE)
HSP 1 Score: 134 bits (338), Expect = 5.950e-38
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL+ERELILIKL+VN+ ER EILNLAQ+FRF+I D+TESTLILE+TADPGKIAAL KVL+KYNILQL R+G IAL RES V+T SL+E
Sbjct: 78 DITYLPLVERELILIKLQVNVTEREEILNLAQVFRFKINDITESTLILEITADPGKIAALHKVLKKYNILQLSRSGGIALTRESSVNTFSLRE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A344PFD2_9PHAE (Acetolactate synthase small subunit n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFD2_9PHAE)
HSP 1 Score: 134 bits (337), Expect = 7.540e-38
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+ITYLPL++REL+L+KL+VNL ER EI LAQIFRF+ITD+T+ST+ILEVTAD GKIAALEK+LEKYNILQL RTG IALIRES VST SLKE
Sbjct: 78 DITYLPLVQRELVLVKLQVNLKERAEISTLAQIFRFKITDMTDSTIILEVTADQGKIAALEKILEKYNILQLSRTGGIALIRESGVSTLSLKE 170
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Match:
A0A8F0JXD3_9PHAE (Acetolactate synthase small subunit n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JXD3_9PHAE)
HSP 1 Score: 134 bits (337), Expect = 7.970e-38
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 7 NITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLILEVTADPGKIAALEKVLEKYNILQLVRTGRIALIRESRVSTSSLKE 285
+IT LPL++REL+LIKL+VNLIERTEILNLAQ+FRF++ D+T+STLILE+TADPGKI AL +VL+KYNILQL RTG IAL RES V+TSSLKE
Sbjct: 78 DITCLPLVQRELLLIKLQVNLIERTEILNLAQVFRFKVIDMTDSTLILEITADPGKIVALYQVLDKYNILQLSRTGEIALTRESSVNTSSLKE 170
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17736.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90 )
Total hits: 25
0 1 Expect = 6.39e-49 / Id = 95.70 Expect = 2.00e-40 / Id = 80.65 Expect = 4.78e-40 / Id = 79.57 Expect = 5.71e-40 / Id = 79.57 Expect = 1.82e-39 / Id = 78.49 Expect = 2.73e-39 / Id = 76.34 Expect = 1.10e-38 / Id = 75.27 Expect = 5.95e-38 / Id = 77.42 Expect = 7.54e-38 / Id = 78.49 Expect = 7.97e-38 / Id = 76.34 Sequence D1J7C0_ECTSI A0A1I9LVF0_9PHAE A0A8F0F7F2_9PHAE A0A6B7EYZ6_9PHAE A0A516IDP2_9PHAE A0A0S0G9Z6_COSCS A0A0R6LUP2_UNDPI A0A8F0F9Y8_9PHAE A0A344PFD2_9PHAE A0A8F0JXD3_9PHAE Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 0 Cds size 285 Model size 285 Exons 1 Hectar predicted targeting category other localisation GOs GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006551,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043621,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0050790,GO:0065007,GO:0065009,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234 KEGG Module M00019,M00570 KEGG Pathway ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko03015,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230,map03015 KEGG Reaction R00006,R00014,R00226,R03050,R04672,R04673,R08648 KEGG ko ko:K01653,ko:K14376 KEGG rclass RC00027,RC00106,RC01192,RC02744,RC02893 Preferred name ilvH Seed eggNOG ortholog 2880.D1J7C0 BRITE ko00000,ko00001,ko00002,ko01000,ko03019 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. E EC 2.2.1.6,2.7.7.19 EggNOG OGs COG0440@1,KOG2663@2759 EggNOG free text desc. acetolactate synthase activity Seed ortholog evalue 2.1e-37 Seed ortholog score 161.4 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622936568.9037452-CDS-E-siliculosus-1a_M_contig98:651864..652149 1622936568.9037452-CDS-E-siliculosus-1a_M_contig98:651864..652149 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 651865..652149 + 1696251135.4855766-CDS-E-siliculosus-1a_M_contig98:651864..652149 1696251135.4855766-CDS-E-siliculosus-1a_M_contig98:651864..652149 Ectocarpus siliculosus Ec864m_EcPH12_78m male CDS E-siliculosus-1a_M_contig98 651865..652149 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17736.1
>prot_E-siliculosus-1a_M_contig98.17736.1 ID=prot_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=95bp
IVNITYLPLIERELILIKLKVNLIERTEILNLAQIFRFRITDVTESTLIL back to top mRNA from alignment at E-siliculosus-1a_M_contig98:651865..652149+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=285bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)ATTGTCAATATAACTTATCTTCCTTTAATAGAACGGGAATTAATATTAAT
AAAACTTAAAGTCAATTTAATAGAACGAACTGAAATTTTAAACCTTGCTC
AAATATTTAGGTTTAGGATTACTGATGTGACAGAGTCTACACTTATTTTA
GAGGTTACTGCTGACCCAGGTAAAATTGCTGCTTTAGAAAAAGTATTAGA
AAAATATAATATTTTACAGTTAGTCCGAACTGGAAGAATAGCCCTTATAC
GTGAGTCTAGAGTTAGTACCTCATCTTTAAAAGAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:651865..652149+
>mRNA_E-siliculosus-1a_M_contig98.17736.1 ID=mRNA_E-siliculosus-1a_M_contig98.17736.1|Name=mRNA_E-siliculosus-1a_M_contig98.17736.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:651865..652149+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) back to top